D
Daniel G. MacArthur
Researcher at Broad Institute
Publications - 281
Citations - 73196
Daniel G. MacArthur is an academic researcher from Broad Institute. The author has contributed to research in topics: Population & Exome sequencing. The author has an hindex of 80, co-authored 265 publications receiving 54145 citations. Previous affiliations of Daniel G. MacArthur include Harvard University & Massachusetts Institute of Technology.
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Transcript expression-aware annotation improves rare variant discovery and interpretation
Beryl B. Cummings,Beryl B. Cummings,Konrad J. Karczewski,Konrad J. Karczewski,Jack A. Kosmicki,Jack A. Kosmicki,Eleanor G. Seaby,Eleanor G. Seaby,Nicholas A. Watts,Nicholas A. Watts,Moriel Singer-Berk,Jonathan M. Mudge,Juha Karjalainen,Juha Karjalainen,F. Kyle Satterstrom,F. Kyle Satterstrom,Anne H. O’Donnell-Luria,Anne H. O’Donnell-Luria,Anne H. O’Donnell-Luria,Timothy Poterba,Timothy Poterba,Cotton Seed,Cotton Seed,Matthew Solomonson,Matthew Solomonson,Jessica Alföldi,Jessica Alföldi,Mark J. Daly,Mark J. Daly,Daniel G. MacArthur,Daniel G. MacArthur +30 more
TL;DR: A transcript-level annotation metric, the proportion expressed across transcripts (pext), which summarizes isoform quantifications for variants, is developed, which clearly differentiates between weakly and highly evolutionarily conserved exons, a proxy for functional importance.
Posted ContentDOI
Centers for Mendelian Genomics: A decade of facilitating gene discovery
Samantha Baxter,Jennifer E. Posey,Nicole J. Lake,Nara Sobreira,Jessica X. Chong,Steven Buyske,Elizabeth E. Blue,Lisa Helbling Chadwick,Zeynep Coban-Akdemir,Zeynep Coban-Akdemir,Kimberly F. Doheny,Colleen P. Davis,Monkol Lek,Monkol Lek,Christopher Wellington,Shalini N. Jhangiani,Mark Gerstein,Richard A. Gibbs,Richard A. Gibbs,Richard P. Lifton,Richard P. Lifton,Daniel G. MacArthur,Daniel G. MacArthur,Tara C. Matise,James R. Lupski,James R. Lupski,David Valle,Michael J. Bamshad,Michael J. Bamshad,Ada Hamosh,Shrikant Mane,Deborah A. Nickerson,Heidi L. Rehm,Heidi L. Rehm,Anne H. O’Donnell-Luria,Anne H. O’Donnell-Luria,Anne H. O’Donnell-Luria +36 more
TL;DR: Mendelian disease genomic research has undergone a massive transformation over the last decade as discussed by the authors, and the role of Mendelian research has expanded beyond data collection, sequencing, and analysis to worldwide data sharing and collaboration.
Journal ArticleDOI
WGS and RNA Studies Diagnose Noncoding DMD Variants in Males With High Creatine Kinase.
Leigh B. Waddell,Samantha J. Bryen,Beryl B. Cummings,Adam Bournazos,Frances J. Evesson,Himanshu Joshi,Jamie L. Marshall,Taru Tukiainen,Elise Valkanas,Ben Weisburd,Simon Sadedin,Mark R. Davis,Fathimath Faiz,Rebecca Gooding,Sarah A. Sandaradura,Gina L. O'Grady,Michel Tchan,David R. Mowat,Emily C. Oates,Michelle A. Farrar,Hugo Sampaio,Alan Ma,Katherine R. Neas,Min-Xia Wang,Amanda Charlton,Charles Chan,Diane Kenwright,Nicole Graf,Susan Arbuckle,Nigel F. Clarke,Daniel G. MacArthur,Kristi J. Jones,Monkol Lek,Sandra T. Cooper +33 more
TL;DR: In this article, the authors describe the diagnostic utility of whole-genome sequencing and RNA studies in boys with suspected dystrophinopathy, for whom multiplex ligation-dependent probe amplification and exomic parallel sequencing failed to yield a genetic diagnosis, and use remnant normal DMD splicing in 3 families to define critical levels of wild-type dystrophicin bridging clinical spectrums of Duchenne to myalgia.
Journal ArticleDOI
Identification of GAA variants through whole exome sequencing targeted to a cohort of 606 patients with unexplained limb-girdle muscle weakness.
Katherine Johnson,Ana Töpf,Marta Bertoli,L. Phillips,Kristl G. Claeys,Kristl G. Claeys,Vidosava Rakocevic Stojanovic,Stojan Peric,Andreas Hahn,Paul Maddison,Ela Akay,Alexandra Bastian,Anna Łusakowska,Anna Kostera-Pruszczyk,Monkol Lek,Monkol Lek,L. Xu,L. Xu,Daniel G. MacArthur,Daniel G. MacArthur,Volker Straub +20 more
TL;DR: The advantage of using whole exome sequencing as a tool for detecting, diagnosing and treating patients with rare, clinically variable genetic disorders is highlighted.
Journal ArticleDOI
Limb girdle muscular dystrophy due to mutations in POMT2
Sofie Thurø Østergaard,Katherine Johnson,Tanya Stojkovic,Thomas Krag,Willem De Ridder,Peter De Jonghe,Jonathan Baets,Kristl G. Claeys,Roberto Fernández-Torrón,L. Phillips,Ana Töpf,Jaume Colomer,Shahriar Nafissi,Shirin Jamal-Omidi,Céline Bouchet-Seraphin,Daniel G. MacArthur,Monkol Lek,L. Xu,Isabelle Nelson,Volker Straub,John Vissing +20 more
TL;DR: The first cohort of patients with LGMD2N is described and it is shown that unlike other LGMD types, all patients had cognitive impairment, and the mutational spectrum is expanded, with the description of 11 novel POMT2 mutations in the association with LG MD2N.