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Metal–Organic Frameworks and Self-Assembled Supramolecular Coordination Complexes: Comparing and Contrasting the Design, Synthesis, and Functionality of Metal–Organic Materials

Fascination with supramolecular chemistry over the last few decades has led to the synthesis of an ever-increasing number of elegant and intricate functional structures with sizes that approach nanoscopic dimensions Today, it has grown into a mature field of modern science whose interfaces with many disciplines have provided invaluable opportunities for crossing boundaries both inside and between the fields of chemistry, physics, and biology This chemistry is of continuing interest for synthetic chemists; partly because of the fascinating physical and chemical properties and the complex and varied aesthetically pleasing structures that supramolecules possess For scientists seeking to design novel molecular materials exhibiting unusual sensing, magnetic, optical, and catalytic properties, and for researchers investigating the structure and function of biomolecules, supramolecular chemistry provides limitless possibilities Thus, it transcends the traditional divisional boundaries of science and represents a highly interdisciplinary field

In the early 1960s, the discovery of ‘crown ethers’, ‘cryptands’ and ‘spherands’ by Pedersen,1 Lehn,2 and Cram3 respectively, led to the realization that small, complementary molecules can be made to recognize each other through non-covalent interactions such as hydrogen-bonding, charge-charge, donor-acceptor, π-π, van der Waals, etc Such ‘programmed’ molecules can thus be self-assembled by utilizing these interactions in a definite algorithm to form large supramolecules that have different physicochemical properties than those of the precursor building blocks Typical systems are designed such that the self-assembly process is kinetically reversible; the individual building blocks gradually funnel towards an ensemble that represents the thermodynamic minimum of the system via numerous association and dissociation steps By tuning various reaction parameters, the reaction equilibrium can be shifted towards the desired product As such, self-assembly has a distinct advantage over traditional, stepwise synthetic approaches when accessing large molecules

It is well known that nature has the ability to assemble relatively simple molecular precursors into extremely complex biomolecules, which are vital for life processes Nature’s building blocks possess specific functionalities in configurations that allow them to interact with one another in a deliberate manner Protein folding, nucleic acid assembly and tertiary structure, phospholipid membranes, ribosomes, microtubules, etc are but a selective, representative example of self-assembly in nature that is of critical importance for living organisms Nature makes use of a variety of weak, non-covalent interactions such as hydrogen–bonding, charge–charge, donor–acceptor, π-π, van der Waals, hydrophilic and hydrophobic, etc interactions to achieve these highly complex and often symmetrical architectures In fact, the existence of life is heavily dependent on these phenomena The aforementioned structures provide inspiration for chemists seeking to exploit the ‘weak interactions’ described above to make scaffolds rivaling the complexity of natural systems

The breadth of supramolecular chemistry has progressively increased with the synthesis of numerous unique supramolecules each year Based on the interactions used in the assembly process, supramolecular chemistry can be broadly classified in to three main branches: i) those that utilize H-bonding motifs in the supramolecular architectures, ii) processes that primarily use other non-covalent interactions such as ion-ion, ion-dipole, π–π stacking, cation-π, van der Waals and hydrophobic interactions, and iii) those that employ strong and directional metal-ligand bonds for the assembly process However, as the scale and degree of complexity of desired molecules increases, the assembly of small molecular units into large, discrete supramolecules becomes an increasingly daunting task This has been due in large part to the inability to completely control the directionality of the weak forces employed in the first two classifications above Coordination-driven self-assembly, which defines the third approach, affords a greater control over the rational design of 2D and 3D architectures by capitalizing on the predictable nature of the metal-ligand coordination sphere and ligand lability to encode directionality Thus, this third strategy represents an alternative route to better execute the “bottom-up” synthetic strategy for designing molecules of desired dimensions, ranging from a few cubic angstroms to over a cubic nanometer For instance, a wide array of 2D systems: rhomboids, squares, rectangles, triangles, etc, and 3D systems: trigonal pyramids, trigonal prisms, cubes, cuboctahedra, double squares, adamantanoids, dodecahedra and a variety of other cages have been reported As in nature, inherent preferences for particular geometries and binding motifs are ‘encoded’ in certain molecules depending on the metals and functional groups present; these moieties help to control the way in which the building blocks assemble into well-defined, discrete supramolecules4

Since the early pioneering work by Lehn5 and Sauvage6 on the feasibility and usefulness of coordination-driven self-assembly in the formation of infinite helicates, grids, ladders, racks, knots, rings, catenanes, rotaxanes and related species,7 several groups - Stang,8 Raymond,9 Fujita,10 Mirkin,11 Cotton12 and others13,14 have independently developed and exploited novel coordination-based paradigms for the self-assembly of discrete metallacycles and metallacages with well-defined shapes and sizes In the last decade, the concepts and perspectives of coordination-driven self-assembly have been delineated and summarized in several insightful reviews covering various aspects of coordinationdriven self-assembly15 In the last decade, the use of this synthetic strategy has led to metallacages dubbed as “molecular flasks” by Fujita,16 and Raymond and Bergman,17 which due to their ability to encapsulate guest molecules, allowed for the observation of unique chemical phenomena and unusual reactions which cannot be achieved in the conventional gas, liquid or solid phases Furthermore, these assemblies found applications in supramolecular catalysis18,19 and as nanomaterials as developed by Hupp20 and others21,22

This review focuses on the journey of early coordination-driven self-assembly paradigms to more complex and discrete 2D and 3D supramolecular ensembles over the last decade We begin with a discussion of various approaches that have been developed by different groups to assemble finite supramolecular architectures The subsequent sections contain detailed discussions on the synthesis of discrete 2D and 3D systems, their functionalizations and applications

Supramolecular coordination: self-assembly of finite two- and three-dimensional ensembles.

This critical review highlights supermolecular building blocks (SBBs) in the context of their impact upon the design, synthesis, and structure of metal–organic materials (MOMs). MOMs, also known as coordination polymers, hybrid inorganic–organic materials, and metal–organic frameworks, represent an emerging class of materials that have attracted the imagination of solid-state chemists because MOMs combine unprecedented levels of porosity with a range of other functional properties that occur through the metal moiety and/or the organic ligand. First generation MOMs exploited the geometry of metal ions or secondary building units (SBUs), small metal clusters that mimic polygons, for the generation of MOMs. In this critical review we examine the recent (<5 years) adoption of much larger scale metal–organic polyhedra (MOPs) as SBBs for the construction of MOMs by highlighting how the large size and high symmetry of such SBBs can afford improved control over the topology of the resulting MOM and a new level of scale to the resulting framework (204 references).

Design and synthesis of metal-organic frameworks using metal-organic polyhedra as supermolecular building blocks.

Recent Developments in the Preparation and Chemistry of Metallacycles and Metallacages via Coordination

The coupling of aryl or vinyl halides with terminal acetylenes catalysed by palladium and other transition metals, commonly termed as Sonogashira cross-coupling reaction, is one of the most important and widely used sp2–sp carbon–carbon bond formation reactions in organic synthesis, frequently employed in the synthesis of natural products, biologically active molecules, heterocycles, molecular electronics, dendrimers and conjugated polymers or nanostructures. This critical review focuses on developments in the Sonogashira reaction achieved in recent years concerning catalysts, reaction conditions and substrates (352 references).

Recent advances in Sonogashira reactions

The role of MoO2Cl2 and some complexes containing MoO2Cl2 as catalysts for various Lewis acid catalysed organic transformations, oxidation and reduction reactions is reviewed.

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Application of molybdenum(VI) dichloride dioxide (MoO2Cl2) in organic transformations

Palladium nanoparticles catalyzed Suzuki cross-coupling reactions in ambient conditions

The synthesis of a new macrobicyclic cryptand (L) with heteroditopic receptor sites has been achieved in good yields by the [1 + 1] Schiff base condensation of tris(2-aminoethyl)amine (tren) with the tripodal trialdehyde, tris{[2-(3-(oxomethyl)phenyl)oxy]ethyl}amine at 5 degrees C temperature. The crystal structure of L (P2(1)/c, a = 10.756 (5) A, b = 27.407(9) A, c = 12.000(2) A, beta = 116.22(3) degrees, Z = 4, R = 0.060, R(w) = 0.058) shows a pseudo-3-fold symmetry axis passing through the two bridgehead nitrogens. This symmetry is maintained in chloroform solution also, as indicated from its (1)H-NMR spectral data. The cryptand readily forms inclusion complexes with the Cu(II) ion at the tren end of the cavity. The tetracoordinated Cu(II) cryptate (1) thus formed with Cu(picrate)(2) exhibits a very small A(II) value (60 x 10(-)(4) cm(-)(1)) in its EPR spectrum and low-energy ligand field bands in its electronic spectrum in MeCN at room temperature. The bound Cu(II) ion readily accepts the anions CN(-), SCN(-), or N(3)(-), forming distorted trigonal bipyramidal complexes (2-4). The crystal structure of [Cu(L)(CN)](picrate) (2) (P2(1)/C, a = 13.099(1) A, b = 11.847(8) A, c = 25.844(7) A, beta = 91.22(1) degrees, Z = 4, R = 0.056, R(w) = 0.054) has been determined. The equatorial coordination is provided by the three secondary amino N atoms of the tren unit in L, while the two axial positions are occupied by the bridgehead N of the tren unit and the C atom of the cyanide group. One of the equatorial Cu-N bond distances is 2.339(6) A, which is longer than normal values. The crystal structure of [Cu(L)(NCS)](picrate) (3) (C2/c, a = 47.889(10) A, b = 10.467(5) A, c = 16.922(2) A, beta = 93.90(2) degrees, Z = 8, R = 0.054, R(w) = 0.055) shows the coordination geometry around the Cu(II) ion to be very similar to that in the case of 2. The electronic spectral and EPR spectral data obtained on 2-4 are characteristic of trigonal bipyramidal Cu(II) complexes. The three meta-substituted benzene rings present in L makes the donor atom somewhat rigid in nature which enforces a distorted geometry around the Cu(II) ion.

Synthesis of a Heteroditopic Cryptand Capable of Imposing a Distorted Coordination Geometry onto Cu(II): Crystal Structures of the Cryptand (L), [Cu(L)(CN)](picrate), and [Cu(L)(NCS)](picrate) and Spectroscopic Studies of the Cu(II) Complexes.

A self-assembled coordination cage usually possesses one well-defined three-dimensional (3D) cavity whereas infinite number of 3D-cavities are crafted in a designer metal-organic framework. Construction of a discrete coordination cage possessing multiple number of 3D-cavities is a challenging task. Here we report the peripheral decoration of a trinuclear [Pd3L6] core with one, two and three units of a [Pd2L4] entity for the preparation of multi-3D-cavity conjoined-cages of [Pd4(La)2(Lb)4], [Pd5(Lb)4(Lc)2] and [Pd6(Lc)6] formulations, respectively. Formation of the tetranuclear and pentanuclear complexes is attributed to the favorable integrative self-sorting of the participating components. Cage-fusion reactions and ligand-displacement-induced cage-to-cage transformation reactions are carried out using appropriately chosen ligand components and cages prepared in this work. The smaller [Pd2L4] cavity selectively binds one unit of NO3−, F−, Cl− or Br− while the larger [Pd3L6] cavity accommodates up to four DMSO molecules. Designing aspects of our conjoined-cages possess enough potential to inspire construction of exotic molecular architectures. Developing simple routes for construction of multi-compartmental cages is a compelling and challenging task. Here, the authors report modular construction of multi-3D-cavity cages featuring one, two or three units of a [Pd2L4] entity conjoined with a [Pd3L6] core.

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Self-assembled conjoined-cages.

Proton binding by the two tren-based tris-macrocycles L1 and L2, composed, respectively, by three 1,4,7,10-tetrazacyclododecane ([12]aneN4) and three 1-oxa-4,7,10-triazacyclododecane ([12]aneN3O) macrocyclic moieties appended to a “tren” unit (tren = tris(2-aminoethyl)amine), has been analyzed by means of potentiometric and 1H and 13C NMR measurements in aqueous solutions This study reveals that the ligands form highly charged polyammonium cations at neutral pH, containing six acidic protons equally distributed among the three macrocyclic units A potentiometric and UV-vis spectrophotometric study shows that both ligands can form stable trinuclear Cu(II) complexes in a wide pH range In the polynuclear complexes each metal is coordinated to a single macrocyclic unit While the Cu(II) complexes with L1 do not show any tendency to form hydroxylated complexes, the mono-, di- and trinuclear L2 complexes give stable hydroxo-complexes, present in aqueous solutions from slightly acidic to alkaline pH values Melting point studies indicate that the new tris-macrocyles and their Cu(II) complexes lead to stronger stabilization of double-stranded nucleic acids than those observed earlier with analogous ditopic macrocyclic ligands, again with preference for RNA-type polymers compared to DNA The copper complexes promote cleavage of plasmid DNA and of bis-p-nitrophenyl phosphate (BNPP) Particular rate enhancements for BNPP with some complexes are attributed to the simultaneous action of three metal ions and partially to the formation of hydroxo complexes at neutral pH

Dillip Kumar Chand

Papers

Application of molybdenum(VI) dichloride dioxide (MoO2Cl2) in organic transformations

Palladium nanoparticles catalyzed Suzuki cross-coupling reactions in ambient conditions

Synthesis of a Heteroditopic Cryptand Capable of Imposing a Distorted Coordination Geometry onto Cu(II): Crystal Structures of the Cryptand (L), [Cu(L)(CN)](picrate), and [Cu(L)(NCS)](picrate) and Spectroscopic Studies of the Cu(II) Complexes.

Self-assembled conjoined-cages.

Proton and Cu(II) binding to tren-based tris-macrocycles. Affinity towards nucleic acids and nuclease activity