F
Federica Eduati
Researcher at Eindhoven University of Technology
Publications - 37
Citations - 843
Federica Eduati is an academic researcher from Eindhoven University of Technology. The author has contributed to research in topics: Cancer & Computer science. The author has an hindex of 13, co-authored 30 publications receiving 626 citations. Previous affiliations of Federica Eduati include European Bioinformatics Institute & University of Padua.
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Journal ArticleDOI
A microfluidics platform for combinatorial drug screening on cancer biopsies
Federica Eduati,Ramesh Utharala,Dharanija Madhavan,Ulf P. Neumann,Thomas Longerich,Thorsten Cramer,Julio Saez-Rodriguez,Julio Saez-Rodriguez,Julio Saez-Rodriguez,Christoph A. Merten +9 more
TL;DR: A microfluidic platform that allows testing of multiple drug combinations correctly predicting sensitivity in vivo and it is used on patients biopsies to define effective drugs can pave the way for rapid determination of optimal personalized cancer therapies.
Journal ArticleDOI
Prediction of human population responses to toxic compounds by a collaborative competition.
Federica Eduati,Lara M. Mangravite,Tao Wang,Hao Tang,J. Christopher Bare,Ruili Huang,Thea Norman,Michael R. Kellen,Michael P. Menden,Jichen Yang,Xiaowei Zhan,Rui Zhong,Guanghua Xiao,Menghang Xia,Nour Abdo,Oksana Kosyk,Stephen H. Friend,Allen Dearry,Anton Simeonov,Raymond R. Tice,Ivan Rusyn,Fred A. Wright,Gustavo Stolovitzky,Yang Xie,Julio Saez-Rodriguez +24 more
TL;DR: The results from a community-based DREAM challenge to predict toxicities of environmental compounds with potential adverse health effects for human populations highlight the possibility of predicting health risks associated with unknown compounds, although risk estimation accuracy remains suboptimal.
Journal ArticleDOI
Drug Resistance Mechanisms in Colorectal Cancer Dissected with Cell Type-Specific Dynamic Logic Models.
Federica Eduati,Victoria Doldán-Martelli,Victoria Doldán-Martelli,Bertram Klinger,Bertram Klinger,Thomas Cokelaer,Anja Sieber,Anja Sieber,Fiona Kogera,Mathurin Dorel,Mathurin Dorel,Mathew J. Garnett,Nils Blüthgen,Nils Blüthgen,Julio Saez-Rodriguez,Julio Saez-Rodriguez +15 more
TL;DR: It is suggested that to better understand the cancer resistance and move toward personalized medicine, it is essential to consider signaling network dynamics that cannot be inferred from static genotypes.
Journal ArticleDOI
Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming
Carito Guziolowski,Santiago Videla,Federica Eduati,Sven Thiele,Thomas Cokelaer,Anne Siegel,Julio Saez-Rodriguez +6 more
TL;DR: Caspo as mentioned in this paper is an open-source Python package that provides a powerful platform to learn and characterize logic models by leveraging the rich modeling language and solving technologies of Answer Set Programming.
Journal ArticleDOI
Multi-omics profiling of the tumor microenvironment: Paving the way to precision immuno-oncology
TL;DR: This Mini Review gives an overview of the methodologies that allow studying the heterogeneity of the TME from multi-omics data generated from bulk samples, single cells, or images of tumor-tissue slides, and discusses how this broader vision of the cellular heterogeneity and plasticity of tumors offers the opportunity to rationally design precision immuno-oncology treatments.