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Gavin E. Duggan
Researcher at Google
Publications - 17
Citations - 6099
Gavin E. Duggan is an academic researcher from Google. The author has contributed to research in topics: Human genome & Metabolomics. The author has an hindex of 13, co-authored 17 publications receiving 5111 citations. Previous affiliations of Gavin E. Duggan include University of Calgary & Veterans Health Administration.
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Journal ArticleDOI
HMDB: The human metabolome database
David S. Wishart,Dan Tzur,Craig Knox,Roman Eisner,An Chi Guo,Nelson Young,Dean Cheng,Kevin Jewell,David Arndt,Summit Sawhney,Chris Fung,Lisa Nikolai,Michael J. Lewis,Marie-Aude Coutouly,Ian D. Forsythe,Peter Tang,Savita Shrivastava,Kevin Jeroncic,Paul Stothard,Godwin Amegbey,David Block,David Hau,James Wagner,Jessica Miniaci,Melisa Clements,Mulu Gebremedhin,Natalie Guo,Ying Wen Zhang,Gavin E. Duggan,Glen D. MacInnis,Alim M. Weljie,Reza Dowlatabadi,Fiona Bamforth,Derrick L. J. Clive,Russell Greiner,Liang Li,Thomas J. Marrie,Brian D. Sykes,Hans J. Vogel,Lori M.M. Querengesser +39 more
TL;DR: The Human Metabolome Database is designed to address the broad needs of biochemists, clinical chemists, physicians, medical geneticists, nutritionists and members of the metabolomics community.
Journal ArticleDOI
Scalable and accurate deep learning with electronic health records
Alvin Rajkomar,Alvin Rajkomar,Eyal Oren,Kai Chen,Andrew M. Dai,Nissan Hajaj,Michaela Hardt,Peter J. Liu,Xiaobing Liu,Jake Marcus,Mimi Sun,Patrik Sundberg,Hector Yee,Kun Zhang,Yi Zhang,Gerardo Flores,Gavin E. Duggan,Jamie Irvine,Quoc V. Le,Kurt Litsch,Alexander Mossin,Justin Tansuwan,De Wang,James Wexler,Jimbo Wilson,Dana Ludwig,Samuel L. Volchenboum,Katherine Chou,Michael Pearson,Srinivasan Madabushi,Nigam H. Shah,Atul J. Butte,Michael D. Howell,Claire Cui,Greg S. Corrado,Jeffrey Dean +35 more
TL;DR: A representation of patients’ entire raw EHR records based on the Fast Healthcare Interoperability Resources (FHIR) format is proposed, and it is demonstrated that deep learning methods using this representation are capable of accurately predicting multiple medical events from multiple centers without site-specific data harmonization.
Journal ArticleDOI
Scalable and accurate deep learning for electronic health records
Alvin Rajkomar,Eyal Oren,Kai Chen,Andrew M. Dai,Nissan Hajaj,Peter J. Liu,Xiaobing Liu,Mimi Sun,Patrik Sundberg,Hector Yee,Kun Zhang,Gavin E. Duggan,Gerardo Flores,Michaela Hardt,Jamie Irvine,Quoc V. Le,Kurt Litsch,Jake Marcus,Alexander Mossin,Justin Tansuwan,De Wang,James Wexler,Jimbo Wilson,Dana Ludwig,Samuel L. Volchenboum,Katherine Chou,Michael Pearson,Srinivasan Madabushi,Nigam H. Shah,Atul J. Butte,Michael D. Howell,Claire Cui,Greg S. Corrado,Jeffrey Dean +33 more
TL;DR: In this paper, the authors proposed a representation of patients' entire, raw EHR records based on the Fast Healthcare Interoperability Resources (FHIR) format and demonstrated that deep learning methods using this representation are capable of accurately predicting multiple medical events from multiple centers without site-specific data harmonization.
Journal ArticleDOI
Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome
TL;DR: A novel tool named eFISH (electronic fluorescence in situ hybridization) is described, a BLAST-based program that was developed to facilitate the choice of appropriate clones for FISH and CGH experiments, as well as interpretation of results in which genomic DNA probes are used in hybridization-based experiments.
Journal ArticleDOI
Human Chromosome 7: DNA Sequence and Biology
Stephen W. Scherer,Joseph Y. Cheung,Jeffrey R. MacDonald,Lucy R. Osborne,Kazuhiko Nakabayashi,Jo Anne Herbrick,Andrew R. Carson,Layla Parker-Katiraee,Jennifer Skaug,Razi Khaja,Junjun Zhang,Alexander K. Hudek,Martin Li,May Haddad,Gavin E. Duggan,Bridget A. Fernandez,Emiko Kanematsu,Simone Gentles,Constantine C. Christopoulos,Sanaa Choufani,Dorota Kwasnicka,Xiangqun H. Zheng,Zhongwu Lai,Deborah R. Nusskern,Qing Zhang,Zhiping Gu,Fu Lu,Susan Zeesman,Małgorzata J.M. Nowaczyk,Ikuko Teshima,David Chitayat,Cheryl Shuman,Rosanna Weksberg,Elaine H. Zackai,Theresa A. Grebe,Sarah R. Cox,Susan J. Kirkpatrick,Nazneen Rahman,Jan M. Friedman,Henry H.Q. Heng,Pier Giuseppe Pelicci,Francesco Lo-Coco,Elena Belloni,Lisa G. Shaffer,Barbara R. Pober,Cynthia C. Morton,James F. Gusella,Gail A. P. Bruns,Bruce R. Korf,Bradley J. Quade,Azra H. Ligon,Heather L. Ferguson,Anne W. Higgins,Natalia T. Leach,Steven R. Herrick,Emmanuelle Lemyre,Chantal Farra,Hyung Goo Kim,Anne M. Summers,Karen W. Gripp,Wendy Roberts,Peter Szatmari,Elizabeth J.T. Winsor,Karl Heinz Grzeschik,Ahmed Teebi,Berge A. Minassian,Juha Kere,Luis Armengol,Miguel Angel Pujana,Xavier Estivill,Michael D. Wilson,Ben F. Koop,Silvano Tosi,Gudrun E. Moore,Andrew P. Boright,Eitan Zlotorynski,Batsheva Kerem,Peter M. Kroisel,Erwin Petek,David G. Oscier,Sarah J. Mould,Hartmut Döhner,Konstanze Döhner,Johanna M. Rommens,John B. Vincent,J. Craig Venter,Peter W. Li,Richard J. Mural,Mark Raymond Adams,Lap-Chee Tsui,Lap-Chee Tsui +90 more
TL;DR: Additional structural features such as imprinted genes, fragile sites, and segmental duplications were integrated at the level of the DNA sequence with medical genetic data, including 440 chromosome rearrangement breakpoints associated with disease.