J
Juan M. Osorno
Researcher at North Dakota State University
Publications - 67
Citations - 2291
Juan M. Osorno is an academic researcher from North Dakota State University. The author has contributed to research in topics: Phaseolus & Biology. The author has an hindex of 19, co-authored 58 publications receiving 1805 citations. Previous affiliations of Juan M. Osorno include Dakota State University & University of Puerto Rico at Mayagüez.
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Journal ArticleDOI
A reference genome for common bean and genome-wide analysis of dual domestications
Jeremy Schmutz,Phillip E. McClean,Sujan Mamidi,G Albert Wu,Steven B. Cannon,Jane Grimwood,Jerry Jenkins,Shengqiang Shu,Qijian Song,Carolina Chavarro,Mirayda Torres-Torres,Valérie Geffroy,Samira Mafi Moghaddam,Dongying Gao,Brian Abernathy,Kerrie Barry,Matthew W. Blair,Mark A. Brick,Mansi Chovatia,Paul Gepts,David Goodstein,Michael D. Gonzales,Uffe Hellsten,David L. Hyten,Gaofeng Jia,James D. Kelly,Dave Kudrna,Rian Lee,Manon M.S. Richard,Phillip N. Miklas,Juan M. Osorno,Josiane Rodrigues,Vincent Thareau,Carlos A. Urrea,Mei Wang,Yeisoo Yu,Ming Zhang,Rod A. Wing,Perry B. Cregan,Daniel S. Rokhsar,Scott A. Jackson +40 more
TL;DR: 2 independent domestications from genetic pools that diverged before human colonization are confirmed and a set of genes linked with increased leaf and seed size are identified and combined with quantitative trait locus data from Mesoamerican cultivars.
Journal ArticleDOI
SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean.
Qijian Song,Gaofeng Jia,David L. Hyten,Jerry Jenkins,Eun-Young Hwang,Steven G. Schroeder,Juan M. Osorno,Jeremy Schmutz,Scott A. Jackson,Phillip E. McClean,Perry B. Cregan +10 more
TL;DR: A total of 992,682 single-nucleotide polymorphisms (SNPs) was identified as ideal for Illumina Infinium II BeadChip design after sequencing a diverse set of 17 common bean varieties with the aid of next-generation sequencing technology.
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Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean.
Samira Mafi Moghaddam,Sujan Mamidi,Juan M. Osorno,Rian Lee,Mark A. Brick,James D. Kelly,Phillip N. Miklas,Carlos A. Urrea,Qijian Song,Perry B. Cregan,Jane Grimwood,Jeremy Schmutz,Phillip E. McClean +12 more
TL;DR: This study detected ∼30 candidate genes based on a priori and candidate gene search strategies centered on the 100‐kb region surrounding a significant SNP, providing a framework from which further research can begin to understand the actual genes controlling important agronomic production traits in common bean.
Journal ArticleDOI
Achievements and limitations of contemporary common bean breeding using conventional and molecular approaches
James S. Beaver,Juan M. Osorno +1 more
TL;DR: Genomic examination of complex traits such as adaptation to low soil fertility and tolerance to high levels of soluble Al in the soil using conventional breeding methods should help bean breeders devise more effective selection strategies.
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Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L.
Samira Mafi Moghaddam,Qijian Song,Sujan Mamidi,Jeremy Schmutz,Rian Lee,Perry B. Cregan,Juan M. Osorno,Phillip E. McClean +7 more
TL;DR: In this article, the InDel markers were developed using a combination of assembly, alignment and primer design software using 1.6× to 5.1× coverage of Illumina GAII sequence data for each of the selected genotypes.