K
Kathleen C. Hayashibara
Researcher at Life Technologies
Publications - 7
Citations - 904
Kathleen C. Hayashibara is an academic researcher from Life Technologies. The author has contributed to research in topics: Medicine & Genotyping. The author has an hindex of 3, co-authored 3 publications receiving 810 citations.
Papers
More filters
Journal ArticleDOI
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
Kevin McKernan,Heather E. Peckham,Gina Costa,Stephen F. McLaughlin,Yutao Fu,Eric F. Tsung,Christopher Clouser,Cisyla Duncan,Jeffrey K. Ichikawa,Clarence Lee,Zheng Zhang,Swati Ranade,Eileen T. Dimalanta,Fiona Hyland,Tanya Sokolsky,Lei Zhang,Andrew Sheridan,Haoning Fu,Cynthia L. Hendrickson,Bin Li,Lev Kotler,Jeremy R. Stuart,Joel A. Malek,Jonathan M. Manning,Alena A. Antipova,Damon S. Perez,Michael P. Moore,Kathleen C. Hayashibara,Michael R. Lyons,Robert E. Beaudoin,Brittany E. Coleman,Michael W. Laptewicz,Adam Sannicandro,Michael D. Rhodes,Rajesh Gottimukkala,Shan Yang,Vineet Bafna,Ali Bashir,Andrew MacBride,Can Alkan,Jeffrey M. Kidd,Evan E. Eichler,Martin G. Reese,Francisco M. De La Vega,Alan Blanchard +44 more
TL;DR: Dozens of mutations previously described in OMIM and hundreds of nonsynonymous single-nucleotide and structural variants in genes previously implicated in disease are identified in this individual.
Journal Article
The SNPlex genotyping system: a flexible and scalable platform for SNP genotyping.
Andreas R Tobler,Sabine Short,Mark R. Andersen,Teodoro Paner,Jason C Briggs,Stephen M Lambert,Priscilla P Wu,Yiwen Wang,Alexander Y Spoonde,Ryan T. Koehler,Nicolas Peyret,Caifu Chen,Adam Broomer,Dana Ridzon,Hui Zhou,Bradley S Hoo,Kathleen C. Hayashibara,Lilley Leong,Congcong N Ma,Barnet B Rosenblum,Joseph P. Day,Janet S. Ziegle,Francisco M. De La Vega,Michael D. Rhodes,Kevin Hennessy,H. Michael Wenz +25 more
TL;DR: The principle and applications of the SNPlex Genotyping System are described, as well as a set of single nucleotide polymorphism selection tools and validated assay resources that accelerate the assay design process.
Journal ArticleDOI
Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination
Alexandre Bolze,S. White,Tina Basler,Andrew Dei Rossi,Pavitra Roychoudhury,Alexander L. Greninger,Kathleen C. Hayashibara,D. R. Wyman,Eui Jun Kil,H. Dai,T. Cassens,K H Tsan,J. Nguyen,J. Ramirez,Stephanie Carter,Elizabeth T. Cirulli,Kelly M. Schiabor Barrett,Pedro Belda-Ferre,Nicole L. Washington,S. Jacobs,Efren Sandoval,Dirk Becker,J. T. Lu,Magnus Isaksson,W. Lee,Shengmei Luo +25 more
TL;DR: In this article , the presence and fraction of reads supporting mutations specific to either the Delta or Omicron variants of SARS-CoV-2 was analyzed and the authors identified 18 co-infections, one of which displayed evidence of a low Delta-Omicron recombinant virus population.
Patent
Normalization of data using controls
H. Kao,Ian A. Harding,Kathleen C. Hayashibara,Achim Karger,Fiona Laird Hyland,Mark F. Oldham,Omead Ostadan,Mark Pratt,Junko Stevens,Austin B. Tomaney,Greg Young +10 more
TL;DR: A method of using a standard to correct for variability in sample handling, which can include adding a template of known concentration to an assay comprising a sample, preamplifying the assay, amplifying the assays, collecting data during the amplifying, and correcting the data using a comparison of data collected from the template to the sample as mentioned in this paper.
Journal ArticleDOI
A Method for Variant Agnostic Detection of SARS-CoV-2, Rapid Monitoring of Circulating Variants, and Early Detection of Emergent Variants Such as Omicron
Eric Yo Ping Lai,Emily B. Kennedy,Jean Lozach,Kathleen C. Hayashibara,Jeremy Davis-Turak,D.S. Becker,Pius Brzoska,T. Cassens,Evan E Diamond,Manoj Gandhi,Alexander L. Greninger,P. Hajian,N. Leonetti,J. Nguyen,K. M. C. O'Donovan,T. Peck,J. Ramirez,Pavitra Roychoudhury,Efren Sandoval,Cassandra Wesselman,Timothy Wesselman,Simon R. White,Stephen Williams,D. Wong,Yufei Yu,R S Creager +25 more
TL;DR: A customizable reverse transcription PCR (RT-PCR)-based genotyping approach which is significantly less expensive, accelerates reporting, and can be implemented in any lab that performs RT- PCR is described.