There is, I think, something ethereal about i —the square root of minus one. I remember first hearing about it at school. It seemed an odd beast at that time—an intruder hovering on the edge of reality.

Usually familiarity dulls this sense of the bizarre, but in the case of i it was the reverse: over the years the sense of its surreal nature intensified. It seemed that it was impossible to write mathematics that described the real world in …

I and i

Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

Fast parallel algorithms for short-range molecular dynamics

다중혈관 관상동맥 환자에서 y-문합을 이용하여 양쪽 내흉동맥만을 사용한 우회술의 조기 성적

QUANTUM ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling, based on density-functional theory, plane waves, and pseudopotentials (norm-conserving, ultrasoft, and projector-augmented wave). The acronym ESPRESSO stands for opEn Source Package for Research in Electronic Structure, Simulation, and Optimization. It is freely available to researchers around the world under the terms of the GNU General Public License. QUANTUM ESPRESSO builds upon newly-restructured electronic-structure codes that have been developed and tested by some of the original authors of novel electronic-structure algorithms and applied in the last twenty years by some of the leading materials modeling groups worldwide. Innovation and efficiency are still its main focus, with special attention paid to massively parallel architectures, and a great effort being devoted to user friendliness. QUANTUM ESPRESSO is evolving towards a distribution of independent and interoperable codes in the spirit of an open-source project, where researchers active in the field of electronic-structure calculations are encouraged to participate in the project by contributing their own codes or by implementing their own ideas into existing codes.

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QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials

抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

We solve for the elementary excitation in infinite quasi-1D quantum lattices by extending the recently developed infinite quasi-1D entanglement perturbation theory. The wave function of an excited state is variationally determined by optimizing superposition of cluster operation, each of which is composed of simultaneous on-site operation inside a block of lattice sites, on the ground state in a form of plane wave. The excitation energy with respect to the wave number gives the spectra for an elementary excitation. Our method is artificial broadening free and is adaptive for various quasi-particle pictures. Using the triplet spectrum, the application to $\infty$-by-$N$ antiferromagnetic spin-$\frac{1}{2}$ ladders for $N=2, 4, 6, 8$, and $10$ confirms a previous report that there is a quantum dimensional transition, namely, the lattice transits from quasi-1D to 2D at a finite critical value $N_c=10$. The massless triplet dispersion at $\left( \pi, \pi \right)$ sees a vanishing gap. Our results detect the anomaly at $\left(\pi,0\right)$ in the triplet spectrum, agreeing well with the inelastic neutron scattering measurement of a macroscopic sample. Surprisingly, our results also reveal a gapless and massive 1D singlet dispersion channel that is much lower than the triplet excitation. We note, however, the dimensional transition is determined by the massless triplet dispersion.

Gapless and Massive 1D Singlet Dispersion Channel in Infinite Spin-1/2 Ladders ---Infinite Quasi-1D Entanglement Perturbation Theory for Excitation

Discrete velocity random motion in an external field

High level ab initio calculations are employed to investigate the excess electron attachment to the hydrated hydrohalogen acids. The excess electron leads to the dissociation of hydrogen halide acids, which results in the release of a hydrogen radical. Neutral HCl, HBr, and HI are dissociated by tetrahydration. Upon binding an excess electron, these hydrated hydrohalogen acids show that (i) the H–X bond strength weakens with redshifted H–X stretching frequencies, (ii) HX can have a bound-electron state, a dissociated structure, or a zwitter-ionic structure, and (iii) HCl∕HBr is dissociated by tri/mono-hydration, while HI is dissociated even without hydration. This dissociation is in contrast to the case of electron attachment to hydrated hydrogen fluoric acids for which HF is not dissociated by more than ten water molecules.

Kwang S. Kim

Papers

Gapless and Massive 1D Singlet Dispersion Channel in Infinite Spin-1/2 Ladders ---Infinite Quasi-1D Entanglement Perturbation Theory for Excitation

Discrete velocity random motion in an external field

Hydrogen detachment of the hydrated hydrohalogen acids upon attaching an excess electron.

Vibrational Spectra of Butatriene (C4H4) and Pentatetraene (C5H4): Is Pentatetraene Bent?

Structure, Spectra, and Thermodynamic Energies of the Water Dimer and Hexamer