L
Leighton Coates
Researcher at Oak Ridge National Laboratory
Publications - 122
Citations - 3045
Leighton Coates is an academic researcher from Oak Ridge National Laboratory. The author has contributed to research in topics: Active site & Neutron. The author has an hindex of 29, co-authored 105 publications receiving 2367 citations. Previous affiliations of Leighton Coates include University of Toledo & Los Alamos National Laboratory.
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Journal ArticleDOI
Structural plasticity of SARS-CoV-2 3CL M pro active site cavity revealed by room temperature X-ray crystallography.
Daniel W. Kneller,Gwyndalyn Phillips,Hugh O'Neill,Robert Jedrzejczak,Lucy Stols,Paul Langan,Andrzej Joachimiak,Andrzej Joachimiak,Leighton Coates,Andrey Kovalevsky +9 more
TL;DR: The room temperature X-ray structure of unliganded SARS-CoV-2 3CL Mpro is reported, revealing the ligand-free structure of the active site and the conformation of the catalytic site cavity at near-physiological temperature, which suggests that the room temperature structure may provide more relevant information at physiological temperatures for aiding in molecular docking studies.
Journal ArticleDOI
Enzymes for heme biosynthesis are found in both the mitochondrion and plastid of the malaria parasite Plasmodium falciparum.
TL;DR: All eight enzymes required for de novo heme biosynthesis have been predicted from the nuclear genome of the human malaria parasite Plasmodium falciparum using a GFP reporter in live transfected parasites to study the subcellular localization of three of them.
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Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19.
Atanu Acharya,Rupesh Agarwal,Rupesh Agarwal,Matthew B. Baker,Jerome Baudry,Debsindhu Bhowmik,Swen Boehm,Kendall G. Byler,Samuel Yen-Chi Chen,Leighton Coates,Connor J. Cooper,Connor J. Cooper,Omar Demerdash,Isabella Daidone,John D. Eblen,John D. Eblen,Sally R. Ellingson,Stefano Forli,Jens Glaser,James C. Gumbart,John A. Gunnels,Oscar Hernandez,Stephan Irle,Stephan Irle,Daniel W. Kneller,Andrey Kovalevsky,Jeffrey M. Larkin,Travis J Lawrence,Scott LeGrand,Shih-Hsien Liu,Shih-Hsien Liu,Julie C. Mitchell,Gilchan Park,Jerry M. Parks,Jerry M. Parks,Anna Pavlova,Loukas Petridis,Loukas Petridis,Duncan Poole,Line Pouchard,Arvind Ramanathan,David M. Rogers,Diogo Santos-Martins,Aaron Scheinberg,Ada Sedova,Y. Shen,Y. Shen,Jeremy C. Smith,Jeremy C. Smith,Micholas Dean Smith,Micholas Dean Smith,Carlos Soto,A. Tsaris,Mathialakan Thavappiragasam,Andreas F. Tillack,Josh V. Vermaas,V. Q. Vuong,V. Q. Vuong,Junqi Yin,Shinjae Yoo,Mai Zahran,Laura Zanetti-Polzi +61 more
TL;DR: A supercomputer-driven pipeline for in silico drug discovery using enhanced sampling molecular dynamics (MD) and ensemble docking is presented, including the use of quantum mechanical, machine learning, and artificial intelligence methods to cluster MD trajectories and rescore docking poses.
Journal ArticleDOI
The catalytic mechanism of an aspartic proteinase explored with neutron and X-ray diffraction.
Leighton Coates,Han-Fang Tuan,Stephen J. Tomanicek,Andrey Kovalevsky,Marat Mustyakimov,Peter Erskine,Jon Cooper +6 more
TL;DR: Both neutron and X-ray diffraction data have been used to investigate the transition state of the aspartic proteinase endothiapepsin, revealing the clearest picture yet of the catalytic mechanism by which the enzyme operates.
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A neutron Laue diffraction study of endothiapepsin: implications for the aspartic proteinase mechanism.
TL;DR: The objective was to locate crucial protons at the active site of an inhibitor complex since this will have major implications for a detailed understanding of the mechanism of action of aspartic proteinases.