R
Ronald M. Levy
Researcher at Temple University
Publications - 241
Citations - 14138
Ronald M. Levy is an academic researcher from Temple University. The author has contributed to research in topics: Solvation & Molecular dynamics. The author has an hindex of 66, co-authored 237 publications receiving 13193 citations. Previous affiliations of Ronald M. Levy include Columbia University & University of Pittsburgh.
Papers
More filters
Journal ArticleDOI
Integrated Modeling Program, Applied Chemical Theory (IMPACT).
Jay L. Banks,Hege S. Beard,Yixiang X. Cao,Art E. Cho,Wolfgang Damm,Ramy Farid,Anthony K. Felts,Thomas A. Halgren,Daniel T. Mainz,Jon R. Maple,Robert B. Murphy,Dean M. Philipp,Matthew P. Repasky,Linda Yu Zhang,Bruce J. Berne,Richard A. Friesner,Emilio Gallicchio,Ronald M. Levy +17 more
TL;DR: An overview of the IMPACT molecular mechanics program is provided with an emphasis on recent developments and a description of its current functionality and a status report for the fixed charge and polarizable force fields is included.
Journal ArticleDOI
AGBNP: an analytic implicit solvent model suitable for molecular dynamics simulations and high-resolution modeling.
Emilio Gallicchio,Ronald M. Levy +1 more
TL;DR: An implicit solvent effective potential (AGBNP) is developed that is suitable for molecular dynamics simulations and high‐resolution modeling, based on a novel implementation of the pairwise descreening Generalized Born model and a new nonpolar hydration free energy estimator.
Journal ArticleDOI
Enthalpy−Entropy and Cavity Decomposition of Alkane Hydration Free Energies: Numerical Results and Implications for Theories of Hydrophobic Solvation
TL;DR: The first complete description of the solution thermodynamics of a series of linear, branched, and cyclic alkanes in water by computer simulations, including the enthalpy and entropy changes in addition to the solvation free energies, was reported in this paper.
Journal ArticleDOI
Structural Organization of Bacterial RNA Polymerase Holoenzyme and the RNA Polymerase-Promoter Open Complex
Vladimir Mekler,Ekaterine Kortkhonjia,Ekaterine Kortkhonjia,Jayanta Mukhopadhyay,Jayanta Mukhopadhyay,Jennifer L. Knight,Andrei Revyakin,Andrei Revyakin,Achillefs N. Kapanidis,Achillefs N. Kapanidis,Wei Niu,Wei Niu,Yon W. Ebright,Yon W. Ebright,Ronald M. Levy,Richard H. Ebright,Richard H. Ebright +16 more
TL;DR: In this paper, the authors used fluorescence resonance energy transfer and distance-constrained docking to define the three-dimensional structures of bacterial RNA polymerase holoenzyme and open complex in solution.
Journal ArticleDOI
On the nonpolar hydration free energy of proteins: Surface area and continuum solvent models for the solute-solvent interaction energy
TL;DR: The continuum model constructed in the course of this study provides one path for the development of a computationally efficient implicit solvent nonpolar hydration free energy estimator suitable for high-resolution structural and thermodynamic modeling of biological macromolecules.