S
Steven Schmidt
Researcher at Cold Spring Harbor Laboratory
Publications - 5
Citations - 3614
Steven Schmidt is an academic researcher from Cold Spring Harbor Laboratory. The author has contributed to research in topics: SNP array & Genome. The author has an hindex of 5, co-authored 5 publications receiving 3513 citations.
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Journal ArticleDOI
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
Ravi Sachidanandam,David Weissman,Steven Schmidt,Jerzy M. Kakol,Lincoln Stein,Gabor T. Marth,Steve Sherry,James C. Mullikin,Beverley J. Mortimore,David Willey,Sarah E. Hunt,Charlotte G. Cole,Penny Coggill,Catherine M. Rice,Zemin Ning,Jane Rogers,David R. Bentley,Pui-Yan Kwok,Elaine R. Mardis,Raymond T. Yeh,Brian Schultz,Lisa Cook,Ruth Davenport,Michael Dante,Lucinda Fulton,LaDeana W. Hillier,Robert H. Waterston,John Douglas Mcpherson,Brian Gilman,Stephen F. Schaffner,William J. Van Etten,David Reich,John M. Higgins,Mark J. Daly,Brendan Blumenstiel,Jennifer Baldwin,Nicole Stange-Thomann,Michael C. Zody,Lauren Linton,Eric S. Lander,David Altshuler +40 more
TL;DR: This high-density SNP map provides a public resource for defining haplotype variation across the genome, and should help to identify biomedically important genes for diagnosis and therapy.
Journal ArticleDOI
Gramene: a resource for comparative grass genomics
Doreen Ware,Pankaj Jaiswal,Junjian Ni,Xiaokang Pan,Kuan Y. Chang,Kenneth Clark,Leonid Teytelman,Steven Schmidt,Wei Zhao,Samuel W. Cartinhour,Susan R. McCouch,Lincoln Stein +11 more
TL;DR: Gramene replaces the existing AceDB database 'RiceGenes' with a relational database based on Oracle, which aims to use the rice genetic, physical and sequence maps as fundamental organizing units, to provide a common denominator for moving from one crop grass to another and to serve as a portal for interconnecting with other web-based crop grass resources.
Journal ArticleDOI
Gramene: a bird's eye view of cereal genomes
Pankaj Jaiswal,Junjian Ni,Immanuel Yap,Doreen Ware,William Spooner,Ken Youens-Clark,Liya Ren,Chengzhi Liang,Wei Zhao,Kiran Ratnapu,Benjamin P Faga,Payan Canaran,Molly Fogleman,Claire Hebbard,Shuly Avraham,Steven Schmidt,Terry M. Casstevens,Edward S. Buckler,Lincoln Stein,Susan R. McCouch +19 more
TL;DR: Gramene is a one stop portal for finding curated literature, genetic and genomic datasets related to maps, markers, genes, genomes and quantitative trait loci and contributes to the authors' understanding of the anatomy, development, environmental responses and the factors influencing agronomic performance of cereal crops.
Journal ArticleDOI
Gramene, a tool for grass genomics.
Doreen Ware,Pankaj Jaiswal,Junjian Ni,Immanuel Yap,Xioakang Pan,Kenneth Clark,Leonid Teytelman,Steven Schmidt,Wei Zhao,Kuan Y. Chang,Sam Cartinhour,Lincoln Stein,Susan R. McCouch +12 more
TL;DR: A brief overview of the search tools available to the plant research community in Gramene is presented, making extensive use of controlled vocabularies to describe specific biological attributes in ways that permit users to query those domains and make comparisons across taxonomic groups.
Journal ArticleDOI
Gramene: Development and Integration of Trait and Gene Ontologies for Rice
Pankaj Jaiswal,Doreen Ware,Junjian Ni,Kuan Y. Chang,Wei Zhao,Steven Schmidt,Xiaokang Pan,Kenneth Clark,Leonid Teytelman,Samuel W. Cartinhour,Lincoln Stein,Susan R. McCouch +11 more
TL;DR: Gramene is populating and curating Gramene with annotated rice genomic sequence data and associated biological information including molecular markers, mutants, phenotypes, polymorphisms and Quantitative Trait Loci in order to support queries across various data sets as well as across external databases.