T
Ting-Jan Cho
Researcher at Massachusetts Institute of Technology
Publications - 15
Citations - 1285
Ting-Jan Cho is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Y chromosome & Pseudoautosomal region. The author has an hindex of 6, co-authored 13 publications receiving 1083 citations.
Papers
More filters
Journal ArticleDOI
Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
Daniel W. Bellott,Jennifer F. Hughes,Helen Skaletsky,Laura G. Brown,Tatyana Pyntikova,Ting-Jan Cho,Natalia Koutseva,Sara Zaghlul,Tina Graves,Susie Rock,Colin Kremitzki,Robert S. Fulton,Shannon Dugan,Yan Ding,Donna Morton,Ziad Khan,Lora Lewis,Christian J. Buhay,Qiaoyan Wang,Jennifer Watt,Michael Holder,Sandy Lee,Lynne V. Nazareth,Jessica Alföldi,Steve Rozen,Donna M. Muzny,Wesley C. Warren,Richard A. Gibbs,Richard K. Wilson,David C. Page +29 more
TL;DR: It is proposed that beyond its roles in testis determination and spermatogenesis, the Y chromosome is essential for male viability, and has unappreciated roles in Turner’s syndrome and in phenotypic differences between the sexes in health and disease.
Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators
Jennifer F. Hughes,Helen Skaletsky,Laura G. Brown,Tatyana Pyntikova,Ting-Jan Cho,Natalia Koutseva,Sara Zaghlul,Tina Graves,Susie Rock,Colin Kremitzki,Robert S. Fulton,Shannon Dugan,Yan Ding,Donna Morton,Ziad Khan,Lora Lewis,Christian J. Buhay,Qiaoyan Wang,Jennifer Watt,Michael Holder,Sandy Lee,Lynne V. Nazareth,Jessica Alföldi,Steve Rozen,Donna M. Muzny,Wesley C. Warren,Richard A. Gibbs,Rick K. Wilson,Daniel W. Bellott,David C. Page +29 more
TL;DR: This article reconstructed the evolution of the Y chromosome across eight mammals to identify biases in gene content and the selective pressures that preserved the surviving ancestral genes, and concluded that the gene content of Y chromosome became specialized through selection to maintain the ancestral dosage of homologous X-Y gene pairs that function as broadly expressed regulators of transcription, translation and protein stability.
Journal ArticleDOI
Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes
Jennifer F. Hughes,Helen Skaletsky,Laura G. Brown,Tatyana Pyntikova,Tina Graves,Robert S. Fulton,Shannon Dugan,Yan Ding,Christian J. Buhay,Colin Kremitzki,Qiaoyan Wang,Hua Shen,Michael Holder,Donna Villasana,Lynne V. Nazareth,Andrew Cree,Laura Courtney,Joelle Veizer,Holland Kotkiewicz,Ting-Jan Cho,Natalia Koutseva,Steve Rozen,Donna M. Muzny,Wesley C. Warren,Richard A. Gibbs,Richard K. Wilson,David C. Page +26 more
TL;DR: An empirical reconstruction of human MSY evolution is presented, in which each stratum transitioned from rapid, exponential loss of ancestral genes to strict conservation through purifying selection.
Journal ArticleDOI
Sequence analysis in Bos taurus reveals pervasiveness of X-Y arms races in mammalian lineages.
Jennifer F. Hughes,Helen Skaletsky,Helen Skaletsky,Tatyana Pyntikova,Natalia Koutseva,Terje Raudsepp,Laura G. Brown,Laura G. Brown,Daniel W. Bellott,Ting-Jan Cho,Shannon Dugan-Rocha,Ziad Khan,Colin Kremitzki,Catrina Fronick,Tina A. Graves-Lindsay,Lucinda Fulton,Wesley C. Warren,Richard K. Wilson,Elaine Owens,James E. Womack,William J. Murphy,Donna M. Muzny,Kim C. Worley,Bhanu P. Chowdhary,Richard A. Gibbs,David C. Page,David C. Page +26 more
TL;DR: Using super-resolution sequencing, the Y Chromosome of Bos taurus (bull) is explored and is found to be dominated by massive, lineage-specific amplification of testis-expressed gene families, making it the most gene-dense Y chromosome sequenced to date.
Journal ArticleDOI
Locating and Characterizing a Transgene Integration Site by Nanopore Sequencing.
Peter K. Nicholls,Daniel W. Bellott,Ting-Jan Cho,Tatyana Pyntikova,David C. Page,David C. Page +5 more
TL;DR: N nanopore sequencing is applied in search of the site of integration of Tg(Pou5f1-EGFP)2Mnn (also known as Oct4:EGFP), a widely used fluorescent reporter in mouse germ line research, and it is suggested that such an approach provides a rapid, cost-effective method for identifying and analyzing transgene integration sites.