T
Tomomi Shimogori
Researcher at RIKEN Brain Science Institute
Publications - 79
Citations - 4812
Tomomi Shimogori is an academic researcher from RIKEN Brain Science Institute. The author has contributed to research in topics: Thalamus & Cerebral cortex. The author has an hindex of 31, co-authored 71 publications receiving 3995 citations.
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Journal ArticleDOI
Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain.
Hiroshi Hama,Hiroshi Kurokawa,Hiroyuki Kawano,Ryoko Ando,Tomomi Shimogori,Hisayori Noda,Kiyoko Fukami,Asako Sakaue-Sawano,Atsushi Miyawaki +8 more
TL;DR: In Scale-treated mouse brain, neurons labeled with genetically encoded fluorescent proteins were visualized at an unprecedented depth in millimeter-scale networks and at subcellular resolution, suggesting that the Scale method will be useful for light microscopy–based connectomics of cellular networks in brain and other tissues.
Journal ArticleDOI
A genomic atlas of mouse hypothalamic development
Tomomi Shimogori,Daniel A. Lee,Ana M. Miranda-Angulo,Yanqin Yang,Hong Wang,Lizhi Jiang,Aya C. Yoshida,Ayane Kataoka,Hiromi Mashiko,Marina Avetisyan,Marina Avetisyan,Lixin Qi,Lixin Qi,Jiang Qian,Seth Blackshaw +14 more
TL;DR: A detailed molecular atlas of the developing hypothalamus was constructed and markers that stably labeled each major hypothalamic nucleus over the entire course of neurogenesis were used to analyze the phenotype of mice in which Sonic Hedgehog was selectively deleted from hypothalamic neuroepithelium and found that Shh is essential for anterior hypothalamic patterning.
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A Bilirubin-Inducible Fluorescent Protein from Eel Muscle
Akiko Kumagai,Ryoko Ando,Hideyuki Miyatake,Peter Greimel,Toshihide Kobayashi,Yoshio Hirabayashi,Tomomi Shimogori,Atsushi Miyawaki +7 more
TL;DR: The cloning and characterization of UnaG, a fluorescent protein from Japanese eel, is reported, which will be the prototype for a versatile class of ligand-activated fluorescent proteins, with applications in research, medicine, and bioengineering.
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TBK1 controls autophagosomal engulfment of polyubiquitinated mitochondria through p62/SQSTM1 phosphorylation
TL;DR: The results suggest that TBK1-mediated S403 phosphorylation regulates the efficient autophagosomal engulfment of ubiquitinated mitochondria as an immediate response to the mitochondrial depolarization.
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Hes genes and neurogenin regulate non-neural versus neural fate specification in the dorsal telencephalic midline.
TL;DR: A novel role for bHLH genes in the process of deciding which cells will have a non-neural versus a neural fate is identified, and it is found that the prospective choroid plexus region initially gives rise to Cajal-Retzius cells, specialized neurons that guide neuronal migration.