T
Tsjerk A. Wassenaar
Researcher at University of Groningen
Publications - 59
Citations - 6407
Tsjerk A. Wassenaar is an academic researcher from University of Groningen. The author has contributed to research in topics: Lipid bilayer & Periodic boundary conditions. The author has an hindex of 23, co-authored 57 publications receiving 4903 citations. Previous affiliations of Tsjerk A. Wassenaar include Hanze University of Applied Sciences & University of Erlangen-Nuremberg.
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Journal ArticleDOI
Improved Parameters for the Martini Coarse-Grained Protein Force Field
Djurre H. de Jong,Gurpreet Singh,W. F. Drew Bennett,Clement Arnarez,Tsjerk A. Wassenaar,Lars V. Schäfer,Xavier Periole,D. Peter Tieleman,Siewert J. Marrink +8 more
TL;DR: Improve some of the bonded terms in the Martini protein force field that lead to a more realistic length of α-helices and to improved numerical stability for polyalanine and glycine repeats.
Journal ArticleDOI
Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
Tsjerk A. Wassenaar,Tsjerk A. Wassenaar,Helgi I. Ingólfsson,Rainer A. Böckmann,D. Peter Tieleman,Siewert J. Marrink +5 more
TL;DR: A comprehensive method for building membrane containing systems, characterized by simplicity and versatility, and a survey of properties for a large range of lipids as a start of a computational lipidomics project.
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Lipid organization of the plasma membrane.
Helgi I. Ingólfsson,Manuel N. Melo,Floris J. van Eerden,Clement Arnarez,Cesar A. Lopez,Tsjerk A. Wassenaar,Tsjerk A. Wassenaar,Xavier Periole,Alex H. de Vries,D. Peter Tieleman,Siewert J. Marrink +10 more
TL;DR: In this paper, the authors provided a high-resolution view of the lipid organization of a plasma membrane at an unprecedented level of complexity by combining 14 types of headgroups and 11 types of tails asymmetrically distributed across the two leaflets, closely mimicking an idealized mammalian plasma membrane.
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HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets.
Sjoerd J. de Vries,Aalt D. J. van Dijk,Mickaël Krzeminski,Marc van Dijk,Aurelien Thureau,Victor L. Hsu,Tsjerk A. Wassenaar,Alexandre M. J. J. Bonvin +7 more
TL;DR: HADDOCK2.0 as mentioned in this paper is the most recent version of HADDOCK, which incorporates considerable improvements and new features, such as random patch definition or center-of-mass restraints.
Journal ArticleDOI
Going Backward : A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models
Tsjerk A. Wassenaar,Kristyna Pluhackova,Rainer A. Böckmann,Siewert J. Marrink,D. Peter Tieleman +4 more
TL;DR: The focus of this work is on the coarse-grained MARTINI force field, for which mapping definitions are written to allow conversion to and from the higher-resolution force fields GROMOS, CHARMM, and AMBER, and to andFrom a simplified three-bead lipid model.