W
Wim Brugman
Researcher at Netherlands Cancer Institute
Publications - 13
Citations - 2369
Wim Brugman is an academic researcher from Netherlands Cancer Institute. The author has contributed to research in topics: Breast cancer & Cancer. The author has an hindex of 9, co-authored 11 publications receiving 2132 citations. Previous affiliations of Wim Brugman include MESA+ Institute for Nanotechnology.
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Journal ArticleDOI
Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
Guillaume J. Filion,Joke G. van Bemmel,Ulrich Braunschweig,Wendy Talhout,Jop Kind,Lucas D. Ward,Wim Brugman,Ines J de Castro,Ron M. Kerkhoven,Harmen J. Bussemaker,Bas van Steensel +10 more
TL;DR: A repressive chromatin type is identified that covers about half of the genome and lacks classic heterochromatin markers and transcriptionally active euchromatin consists of two types that differ in molecular organization and H3K36 methylation and regulate distinct classes of genes.
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Molecular Maps of the Reorganization of Genome-Nuclear Lamina Interactions during Differentiation
Daan Peric-Hupkes,Wouter Meuleman,Wouter Meuleman,Ludo Pagie,Sophia W.M. Bruggeman,Irina Solovei,Wim Brugman,Stefan Gräf,Paul Flicek,Ron M. Kerkhoven,Maarten van Lohuizen,Marcel J. T. Reinders,Lodewyk F. A. Wessels,Lodewyk F. A. Wessels,Bas van Steensel +14 more
TL;DR: High-resolution maps of genome-nuclear lamina interactions during subsequent differentiation of mouse embryonic stem cells via lineage-committed neural precursor cells into terminally differentiated astrocytes suggest that lamina-genome interactions are widely involved in the control of gene expression programs during lineage commitment and terminal differentiation.
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Identification of recurrent FGFR3 fusion genes in lung cancer through kinome-centred RNA sequencing.
Ian J. Majewski,Ian J. Majewski,Lorenza Mittempergher,Nadia M Davidson,Astrid Bosma,Stefan M. Willems,Hugo M. Horlings,Iris de Rink,Liliana Greger,Gerrit K. J. Hooijer,Dennis Peters,Petra M. Nederlof,Ingrid Hofland,Jeroen de Jong,Jelle Wesseling,Roelof J.C. Kluin,Wim Brugman,Ron M. Kerkhoven,Frank Nieboer,Paul Roepman,Annegien Broeks,Thomas Muley,Jacek Jassem,Jacek Niklinski,Nico van Zandwijk,Alvis Brazma,Alicia Oshlack,Michel M. van den Heuvel,René Bernards +28 more
TL;DR: This approach provides a global overview of kinase fusion events, irrespective of the identity of the fusion partner, and identifies numerous genetic alterations impacting fibroblast growth factor receptor 3 in lung squamous cell carcinoma and a novel ALK fusion partner in lung adenocarcinoma.
Journal ArticleDOI
The insulator protein SU(HW) fine-tunes nuclear lamina interactions of the Drosophila genome.
Joke G. van Bemmel,Ludo Pagie,Ulrich Braunschweig,Wim Brugman,Wouter Meuleman,Wouter Meuleman,Ron M. Kerkhoven,Bas van Steensel +7 more
TL;DR: The detailed structure of LADs in Drosophila cells is reported, and SU(HW) is identified as a fine-tuner of genome – NL interactions as well as five insulator proteins in LAD organization.
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Dendrimer-Mediated Transfer Printing of DNA and RNA Microarrays
TL;DR: A robotic spotting system, an array of hundreds of oligonucleotide spots is deposited on the surface of a flat, dendrimer-modified stamp that is subsequently used for repeated replication of the entire microarray by microcontact printing, characterized by homogeneous probe density and regular spot morphology.