Y
Yancong Zhang
Researcher at Harvard University
Publications - 22
Citations - 1581
Yancong Zhang is an academic researcher from Harvard University. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 5, co-authored 10 publications receiving 175 citations. Previous affiliations of Yancong Zhang include Broad Institute.
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Journal ArticleDOI
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with biobakery 3
Francesco Beghini,Lauren J. McIver,Aitor Blanco-Míguez,Leonard Dubois,Francesco Asnicar,Sagun Maharjan,Sagun Maharjan,Ana Mailyan,Ana Mailyan,Paolo Manghi,Matthias Scholz,Andrew Maltez Thomas,Mireia Valles-Colomer,George Weingart,George Weingart,Yancong Zhang,Yancong Zhang,Moreno Zolfo,Curtis Huttenhower,Curtis Huttenhower,Eric A. Franzosa,Eric A. Franzosa,Nicola Segata,Nicola Segata +23 more
TL;DR: BioBakery 3 as mentioned in this paper is a set of integrated, improved methods for taxonomic, strain-level, functional, and phylogenetic profiling of metagenomes newly developed to build on the largest set of reference sequences now available.
Posted ContentDOI
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
Francesco Beghini,Lauren J. McIver,Aitor Blanco-Míguez,Leonard Dubois,Francesco Asnicar,Sagun Maharjan,Sagun Maharjan,Ana Mailyan,Ana Mailyan,Andrew Maltez Thomas,Paolo Manghi,Mireia Valles-Colomer,George Weingart,George Weingart,Yancong Zhang,Yancong Zhang,Moreno Zolfo,Curtis Huttenhower,Curtis Huttenhower,Eric A. Franzosa,Eric A. Franzosa,Nicola Segata,Nicola Segata +22 more
TL;DR: With open-source implementations and cloud-deployable reproducible workflows, the bioBakery 3 platform can help researchers deepen the resolution, scale, and accuracy of multi-omic profiling for microbial community studies.
Journal ArticleDOI
Multivariable association discovery in population-scale meta-omics studies.
Himel Mallick,Himel Mallick,Ali Rahnavard,Lauren J. McIver,Lauren J. McIver,Siyuan Ma,Siyuan Ma,Yancong Zhang,Yancong Zhang,Long H. Nguyen,Timothy L. Tickle,George Weingart,George Weingart,Boyu Ren,Boyu Ren,Emma Schwager,Emma Schwager,Suvo Chatterjee,Kelsey N. Thompson,Jeremy E. Wilkinson,Ayshwarya Subramanian,Ayshwarya Subramanian,Yiren Lu,Levi Waldron,Joseph N. Paulson,Eric A. Franzosa,Eric A. Franzosa,Héctor Corrada Bravo,Curtis Huttenhower,Curtis Huttenhower +29 more
TL;DR: MaAsLin 2 (Microbiome Multivariable Associations with Linear Models) as mentioned in this paper uses generalized linear and mixed models to accommodate a wide variety of modern epidemiological studies, including cross-sectional and longitudinal designs, as well as a variety of data types with or without covariates and repeated measurements.
Journal ArticleDOI
A bacterial bile acid metabolite modulates Treg activity through the nuclear hormone receptor NR4A1.
Wei Li,Saiyu Hang,Yuan Fang,Sena Bae,Yancong Zhang,Yancong Zhang,Minghao Zhang,Gang Wang,Megan D. McCurry,Munhyung Bae,Donggi Paik,Eric A. Franzosa,Eric A. Franzosa,Fraydoon Rastinejad,Curtis Huttenhower,Curtis Huttenhower,Lina Yao,A. Sloan Devlin,Jun R. Huh,Jun R. Huh +19 more
Posted ContentDOI
Multivariable Association Discovery in Population-scale Meta-omics Studies
Himel Mallick,Himel Mallick,Ali Rahnavard,Lauren J. McIver,Lauren J. McIver,Siyuan Ma,Siyuan Ma,Yancong Zhang,Yancong Zhang,Long H. Nguyen,Timothy L. Tickle,George Weingart,George Weingart,Boyu Ren,Boyu Ren,Emma Schwager,Emma Schwager,Suvo Chatterjee,Kelsey N. Thompson,Jeremy E. Wilkinson,Ayshwarya Subramanian,Ayshwarya Subramanian,Yiren Lu,Levi Waldron,Joseph N. Paulson,Eric A. Franzosa,Eric A. Franzosa,Héctor Corrada Bravo,Curtis Huttenhower,Curtis Huttenhower +29 more
TL;DR: MaAsLin 2 (Microbiome Multivariable Associations with Linear Models) as mentioned in this paper uses general linear models to accommodate a wide variety of modern epidemiological studies, including cross-sectional and longitudinal designs, as well as a variety of data types with or without covariates and repeated measurements.