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Yingkai Liu
Researcher at Sichuan Agricultural University
Publications - 11
Citations - 967
Yingkai Liu is an academic researcher from Sichuan Agricultural University. The author has contributed to research in topics: Gene & Gene expression profiling. The author has an hindex of 10, co-authored 11 publications receiving 786 citations. Previous affiliations of Yingkai Liu include University of Illinois at Urbana–Champaign.
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Journal ArticleDOI
Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars
Mingzhou Li,Shilin Tian,Long Jin,Guangyu Zhou,Ying Li,Yuan Zhang,Tao Wang,Carol K.L. Yeung,Lei Chen,Jideng Ma,Jinbo Zhang,Anan Jiang,Ji Li,Chaowei Zhou,Jie Zhang,Yingkai Liu,Xiaoqing Sun,Hongwei Zhao,Zexiong Niu,Pinger Lou,Lingjin Xian,Xiaoyong Shen,Shaoqing Liu,Shunhua Zhang,Mingwang Zhang,Li Zhu,Surong Shuai,Lin Bai,Guoqing Tang,Haifeng Liu,Yanzhi Jiang,Miaomiao Mai,Jian Xiao,Xun Wang,Qi Zhou,Zhiquan Wang,Paul Stothard,Ming Xue,Xiaolian Gao,Zonggang Luo,Yiren Gu,Hongmei Zhu,Xiaoxiang Hu,Yaofeng Zhao,Graham Plastow,Jinyong Wang,Zhi Jiang,Kui Li,Ning Li,Xuewei Li,Ruiqiang Li +50 more
TL;DR: Comparing the genome of Tibetan wild boars with those of neighboring Chinese domestic pigs further showed the impact of thousands of years of artificial selection and different signatures of selection in wild boar and domestic pig.
Journal ArticleDOI
An atlas of DNA methylomes in porcine adipose and muscle tissues
Mingzhou Li,Honglong Wu,Zonggang Luo,Zonggang Luo,Yudong Xia,Jiuqiang Guan,Tao Wang,Yiren Gu,Lei Chen,Kai Zhang,Jideng Ma,Yingkai Liu,Zhijun Zhong,Jing Nie,Shuling Zhou,Zhiping Mu,Xiaoyan Wang,Jingjing Qu,Long Jing,Huiyu Wang,Shujia Huang,Na Yi,Zhe Wang,Dongxing Xi,Juan Wang,Guangliang Yin,Li Wang,Ning Li,Zhi Jiang,Qiulei Lang,Huasheng Xiao,Anan Jiang,Li Zhu,Yanzhi Jiang,Guoqing Tang,Miaomiao Mai,Surong Shuai,Kui Li,Jinyong Wang,Xiuqing Zhang,Yingrui Li,Haosi Chen,Xiaolian Gao,Graham Plastow,Stephen Beck,Huanming Yang,Jian Wang,Jun Wang,Xuewei Li,Ruiqiang Li +49 more
TL;DR: This comprehensive map provides a solid basis for exploring the epigenetic mechanisms of adipose deposition and muscle growth in pig as a model and identifies the differentially methylated regions in promoters.
Journal ArticleDOI
Repertoire of Porcine MicroRNAs in Adult Ovary and Testis by Deep Sequencing
Mingzhou Li,Yingkai Liu,Tao Wang,Jiuqiang Guan,Zonggang Luo,Haosi Chen,Xin-Xin Wang,Lei Chen,Jideng Ma,Zhiping Mu,Anan Jiang,Li-li Zhu,Qiulei Lang,Xiaochuan Zhou,Jinyong Wang,Wenxian Zeng,Ning Li,Kui Li,Xiaolian Gao,Xuewei Li +19 more
TL;DR: The present study characterizes the miRNA transcriptome of adult porcine gonads, with an emphasis on the co-expression patterns of X-linked miRNAs, to facilitate studies of the organ-specific reproductive roles of mi RNAs.
Journal ArticleDOI
Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies
Mingzhou Li,Lei Chen,Shilin Tian,Yu Lin,Qianzi Tang,Xuming Zhou,Diyan Li,Carol K.L. Yeung,Tiandong Che,Long Jin,Yuhua Fu,Yuhua Fu,Jideng Ma,Xun Wang,Anan Jiang,Jing Lan,Qi Pan,Yingkai Liu,Zonggang Luo,Zongyi Guo,Haifeng Liu,Li Zhu,Surong Shuai,Guoqing Tang,Jiugang Zhao,Yanzhi Jiang,Lin Bai,Shunhua Zhang,Miaomiao Mai,Changchun Li,Dawei Wang,Yiren Gu,Guosong Wang,Guosong Wang,Hongfeng Lu,Yan Li,Haihao Zhu,Zongwen Li,Ming Li,Vadim N. Gladyshev,Zhi Jiang,Shuhong Zhao,Jinyong Wang,Ruiqiang Li,Xuewei Li +44 more
TL;DR: The results illustrate the power of whole-genome de novo sequencing relative to resequencing and provide valuable genetic resources that enable effective use of pigs in both agricultural production and biomedical research.
Journal ArticleDOI
Identification of differences in microRNA transcriptomes between porcine oxidative and glycolytic skeletal muscles.
TL;DR: This study indicates that miRNAs play essential roles in the phenotypic variations observed in different muscle fiber types, including skeletal muscle structural development, regeneration, cell cycle progression, and the regulation of cell motility.