Z
Zaining Wu
Researcher at University of Washington
Publications - 9
Citations - 2080
Zaining Wu is an academic researcher from University of Washington. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 8, co-authored 9 publications receiving 1929 citations.
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Journal ArticleDOI
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients.
Eric E. Smith,Danielle Buckley,Zaining Wu,Channakhone Saenphimmachak,Lucas R. Hoffman,David A. D'Argenio,Samuel I. Miller,Bonnie W. Ramsey,David P. Speert,Samuel M. Moskowitz,Jane L. Burns,Rajinder Kaul,Maynard V. Olson +12 more
TL;DR: It is found that virulence factors that are required for the initiation of acute infections are often selected against during chronic infections, including cystic fibrosis patient's P. aeruginosa strains.
Journal ArticleDOI
Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources
Stéphane Vuilleumier,Ludmila Chistoserdova,Ming-Chun Lee,Françoise Bringel,Aurélie Lajus,Yang Zhou,Benjamin Gourion,Valérie Barbe,Jean Chang,Stéphane Cruveiller,Carole Dossat,Will Gillett,Christelle Gruffaz,Eric Haugen,Edith Hourcade,Ruth Levy,Sophie Mangenot,Emilie E. L. Muller,Thierry Nadalig,Marco Pagni,Christian Penny,Rémi Peyraud,David G. Robinson,David Roche,Zoé Rouy,Channakhone Saenampechek,Gregory Salvignol,David Vallenet,Zaining Wu,Christopher J. Marx,Julia A. Vorholt,Maynard V. Olson,Rajinder Kaul,Jean Weissenbach,Claudine Médigue,Mary E. Lidstrom +35 more
TL;DR: These two genome sequences provide a platform for intra- and interspecies genomic comparisons in the genus Methylobacterium, and for investigations of the adaptive mechanisms which allow bacterial lineages to acquire methylotrophic lifestyles.
Journal ArticleDOI
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
Talima Pearson,Philip M. Giffard,Philip M. Giffard,Stephen M. Beckstrom-Sternberg,Stephen M. Beckstrom-Sternberg,Raymond K. Auerbach,Raymond K. Auerbach,Heidie Hornstra,Apichai Tuanyok,Erin P. Price,Erin P. Price,Mindy B. Glass,Benjamin Leadem,James S. Beckstrom-Sternberg,Gerard J. Allan,Jeffrey T. Foster,David M. Wagner,Richard T. Okinaka,Richard T. Okinaka,Siew Hoon Sim,Ofori Pearson,Zaining Wu,Jean Chang,Rajinder Kaul,Alex R. Hoffmaster,Thomas Brettin,Richard A. Robison,Mark Mayo,Jay E. Gee,Patrick Tan,Bart J. Currie,Paul Keim,Paul Keim +32 more
TL;DR: An Australian origin for B. pseudomallei is described, characterized by a single introduction event into Southeast Asia during a recent glacial period, and variable levels of lateral gene transfer within populations, to provide a framework for integrating the traditionally separate fields of population genetics and phylogenetics for other bacterial species with high levels ofateral gene transfer.
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Analysis of the Genome of the Escherichia coli O157:H7 2006 Spinach-Associated Outbreak Isolate Indicates Candidate Genes That May Enhance Virulence
Bridget R. Kulasekara,Michael A. Jacobs,Yang Zhou,Zaining Wu,Elizabeth H. Sims,Channakhone Saenphimmachak,Laurence Rohmer,Jennifer M. Ritchie,Matthew C. Radey,Matthew McKevitt,Theodore J. Larson Freeman,Hillary S. Hayden,Eric Haugen,Will Gillett,Christine Fong,Jean Chang,Viktoriya Beskhlebnaya,Matthew K. Waldor,Mansour Samadpour,Thomas S. Whittam,Rajinder Kaul,Mitchell J. Brittnacher,Samuel I. Miller +22 more
TL;DR: The genome of the strain responsible for HUS was sequenced and seven putative virulence determinants were identified, including two putative type III secretion system effector proteins, candidate genes that could result in increased pathogenicity or, alternatively, adaptation to plants, and an intact anaerobic nitric oxide reductase gene, norV.
Journal ArticleDOI
Evolution of Burkholderia pseudomallei in recurrent melioidosis.
Hillary S. Hayden,Regina Lim,Mitchell J. Brittnacher,Elizabeth H. Sims,Elizabeth Ramage,Christine Fong,Zaining Wu,Eva M Crist,Jean Chang,Yang Zhou,Matthew C. Radey,Laurence Rohmer,Eric Haugen,Will Gillett,Vanaporn Wuthiekanun,Sharon J. Peacock,Sharon J. Peacock,Rajinder Kaul,Samuel I. Miller,Colin Manoil,Michael A. Jacobs +20 more
TL;DR: Comparisons of whole-genome comparisons of clonal primary and relapse B. pseudomallei isolates recovered from four adult Thai patients provide new insights into pathogen evolution during long-term infections and have important implications for the development of intervention strategies to combat recurrent melioidosis.