Y
Yang Zhou
Researcher at University of Washington
Publications - 20
Citations - 2767
Yang Zhou is an academic researcher from University of Washington. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 18, co-authored 20 publications receiving 2638 citations.
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Journal ArticleDOI
The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58
Derek W. Wood,João C. Setubal,Rajinder Kaul,Dave E. Monks,João Paulo Kitajima,Vagner K. Okura,Yang Zhou,Lishan Chen,Gwendolyn E. Wood,Nalvo F. Almeida,Lisa Woo,Yuching Chen,Ian T. Paulsen,Jonathan A. Eisen,Peter D. Karp,Donald Bovee,Peter Chapman,James B. Clendenning,Glenda Deatherage,Will Gillet,Charles E. Grant,Tatyana Kutyavin,Ruth Levy,Meng-Jin Li,Erin K. McClelland,Anthony Palmieri,Christopher K. Raymond,Gregory Rouse,Channakhone Saenphimmachak,Zaining Wu,Pedro Romero,David E. Gordon,Shiping Zhang,Heayun Yoo,Yumin Tao,Phyllis Biddle,Mark Timothy Jung,William Krespan,Michael Perry,Bill Gordon-Kamm,Li Liao,Sun Kim,Carol A. Hendrick,Zuo-Yu Zhao,Maureen Dolan,Forrest Chumley,Scott V. Tingey,Jean-Francois Tomb,Milton P. Gordon,Maynard V. Olson,Eugene W. Nester +50 more
TL;DR: The 5.67-megabase genome of the plant pathogen Agrobacterium tumefaciens C58 consists of a circular chromosome, a linear chromosome, and two plasmids that suggest a recent evolutionary divergence.
Journal ArticleDOI
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains
Laurence Rohmer,Christine Fong,Simone Abmayr,Michael Wasnick,Theodore J. Larson Freeman,Matthew C. Radey,Tina Guina,Kerstin Svensson,Kerstin Svensson,Hillary S. Hayden,Michael A. Jacobs,Larry A. Gallagher,Colin Manoil,Robert K. Ernst,Becky Drees,Danielle Buckley,Eric Haugen,Donald Bovee,Yang Zhou,Jean Chang,Ruth Levy,Regina Lim,Will Gillett,Don Guenthener,Allison Kang,Scott A. Shaffer,Greg K. Taylor,Jinzhi Chen,Byron Gallis,David A. D'Argenio,Mats Forsman,Maynard V. Olson,David R. Goodlett,Rajinder Kaul,Samuel I. Miller,Mitchell J. Brittnacher +35 more
TL;DR: The chronology of events suggests a substantial role for genetic drift in the formation of pseudogenes in Francisella genomes, which may be shared by pathogens from other species.
Journal ArticleDOI
The DNA sequence of human chromosome 7
LaDeana W. Hillier,Robert S. Fulton,Lucinda Fulton,Tina Graves,Kymberlie H. Pepin,Caryn Wagner-McPherson,Dan Layman,Jason Maas,Sara Jaeger,Rebecca S. Walker,Kristine M. Wylie,Mandeep Sekhon,Michael C. Becker,Michelle O'Laughlin,Mark E. Schaller,Ginger A. Fewell,Kimberly D. Delehaunty,Tracie L. Miner,William E. Nash,Matt Cordes,Hui Du,Hui Sun,Jennifer Edwards,Holland Bradshaw-Cordum,Johar Ali,Stephanie Andrews,Amber Isak,Andrew Vanbrunt,Christine Nguyen,Feiyu Du,Betty Lamar,Laura Courtney,Joelle Kalicki,Philip Ozersky,Lauren Bielicki,Kelsi Scott,Andrea Holmes,Richard Harkins,Anthony R. Harris,Cindy Strong,Shunfang Hou,Chad Tomlinson,Sara Dauphin-Kohlberg,Amy Kozlowicz-Reilly,Shawn Leonard,Theresa Rohlfing,Susan M. Rock,Aye-Mon Tin-Wollam,Amanda Abbott,Patrick Minx,Rachel Maupin,Catrina Strowmatt,Phil Latreille,Nancy Miller,Doug Johnson,Jennifer Murray,Jeffrey Woessner,Michael C. Wendl,Shiaw-Pyng Yang,Brian Schultz,John W. Wallis,John Spieth,Tamberlyn Bieri,Joanne O. Nelson,Nicolas Berkowicz,Patricia Wohldmann,Lisa Cook,Matthew T. Hickenbotham,James M. Eldred,Donald Williams,Joseph A. Bedell,Elaine R. Mardis,Sandra W. Clifton,Stephanie L. Chissoe,Marco A. Marra,Marco A. Marra,Christopher K. Raymond,Eric Haugen,Will Gillett,Yang Zhou,R. James,Karen A. Phelps,Shawn Iadanoto,Kerry L. Bubb,Elizabeth Simms,Ruth Levy,James B. Clendenning,Rajinder Kaul,W. James Kent,Terrence S. Furey,Robert Baertsch,Michael R. Brent,Evan Keibler,Paul Flicek,Peer Bork,Mikita Suyama,Jeffrey A. Bailey,Matthew E. Portnoy,David Torrents,Asif T. Chinwalla,Warren Gish,Sean R. Eddy,John Douglas Mcpherson,John Douglas Mcpherson,Maynard V. Olson,Evan E. Eichler,Eric D. Green,Robert H. Waterston,Robert H. Waterston,Richard K. Wilson +109 more
TL;DR: The euchromatic sequence of chromosome 7, the first metacentric chromosome completed so far, has excellent concordance with previously established physical and genetic maps, and it exhibits an unusual amount of segmentally duplicated sequence.
Journal ArticleDOI
Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources
Stéphane Vuilleumier,Ludmila Chistoserdova,Ming-Chun Lee,Françoise Bringel,Aurélie Lajus,Yang Zhou,Benjamin Gourion,Valérie Barbe,Jean Chang,Stéphane Cruveiller,Carole Dossat,Will Gillett,Christelle Gruffaz,Eric Haugen,Edith Hourcade,Ruth Levy,Sophie Mangenot,Emilie E. L. Muller,Thierry Nadalig,Marco Pagni,Christian Penny,Rémi Peyraud,David G. Robinson,David Roche,Zoé Rouy,Channakhone Saenampechek,Gregory Salvignol,David Vallenet,Zaining Wu,Christopher J. Marx,Julia A. Vorholt,Maynard V. Olson,Rajinder Kaul,Jean Weissenbach,Claudine Médigue,Mary E. Lidstrom +35 more
TL;DR: These two genome sequences provide a platform for intra- and interspecies genomic comparisons in the genus Methylobacterium, and for investigations of the adaptive mechanisms which allow bacterial lineages to acquire methylotrophic lifestyles.
Journal ArticleDOI
Complete Genome Sequence of the Genetically Tractable Hydrogenotrophic Methanogen Methanococcus maripaludis
Erik L. Hendrickson,Rajinder Kaul,Yang Zhou,Donald Bovee,Peter Chapman,J. Chung,E. Conway de Macario,J. A. Dodsworth,Will Gillett,David E. Graham,Murray Hackett,Andrew Haydock,Allison Kang,Miriam Land,Ruth Levy,Thomas J. Lie,Tiffany A. Major,Brian C. Moore,Iris Porat,A. Palmeiri,Greg W. Rouse,Channakhone Saenphimmachak,Dieter Söll,S. Van Dien,Tiansong Wang,William B. Whitman,Qiangwei Xia,Yaoping Zhang,Frank W. Larimer,Maynard V. Olson,John A. Leigh +30 more
TL;DR: The genome sequence of the genetically tractable, mesophilic, hydrogenotrophic methanogen Methanococcus maripaludis contains 1,722 protein-coding genes in a single circular chromosome of 1,661,137 bp, which explained the ability of the organism to use L- and D-alanine as nitrogen sources.