V
Valérie Barbe
Researcher at Centre national de la recherche scientifique
Publications - 133
Citations - 22213
Valérie Barbe is an academic researcher from Centre national de la recherche scientifique. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 57, co-authored 121 publications receiving 19890 citations. Previous affiliations of Valérie Barbe include University of Évry Val d'Essonne.
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Journal ArticleDOI
Shifting the limits in wheat research and breeding using a fully annotated reference genome
Rudi Appels,Rudi Appels,Kellye Eversole,Nils Stein,Nils Stein,Catherine Feuillet,Beat Keller,Jane Rogers,Curtis J. Pozniak,Frédéric Choulet,Assaf Distelfeld,Jesse Poland,Gil Ronen,Andrew G. Sharpe,Omer Barad,Kobi Baruch,Gabriel Keeble-Gagnère,Martin Mascher,Gil Ben-Zvi,Ambre-Aurore Josselin,Axel Himmelbach,François Balfourier,Juan J. Gutierrez-Gonzalez,Matthew J. Hayden,Chushin Koh,Gary J. Muehlbauer,Raj K. Pasam,Etienne Paux,Philippe Rigault,Josquin Tibbits,Vijay K. Tiwari,Manuel Spannagl,Daniel Lang,Heidrun Gundlach,Georg Haberer,Klaus F. X. Mayer,Danara Ormanbekova,Verena M. Prade,Hana Šimková,Thomas Wicker,David Swarbreck,Hélène Rimbert,Marius Felder,Nicolas Guilhot,Gemy Kaithakottil,Jens Keilwagen,Philippe Leroy,Thomas Lux,Sven Twardziok,Luca Venturini,Angéla Juhász,Michael Abrouk,Iris Fischer,Cristobal Uauy,Philippa Borrill,Ricardo H. Ramirez-Gonzalez,Dominique Arnaud,Smahane Chalabi,Boulos Chalhoub,Boulos Chalhoub,Aron T. Cory,Raju Datla,Mark W. Davey,John Jacobs,Stephen J. Robinson,Burkhard Steuernagel,Fred van Ex,Brande B. H. Wulff,Moussa Benhamed,Abdelhafid Bendahmane,Lorenzo Concia,David Latrasse,Jan Bartoš,Arnaud Bellec,Hélène Bergès,Jaroslav Doležel,Zeev Frenkel,Bikram S. Gill,Abraham B. Korol,Thomas Letellier,Odd-Arne Olsen,Kuldeep Singh,Miroslav Valárik,Edwin A. G. van der Vossen,Sonia Vautrin,Song Weining,Tzion Fahima,Vladimir Glikson,Dina Raats,Jarmila Číhalíková,Helena Toegelová,Jan Vrána,Pierre Sourdille,Benoit Darrier,D. Barabaschi,Luigi Cattivelli,Pilar Hernández,Sergio Gálvez,Hikmet Budak,Jonathan D. G. Jones,Kamil Witek,Guotai Yu,Ian Small,Joanna Melonek,Ruonan Zhou,Tatiana Belova,Kostya Kanyuka,Robert King,Kirby T. Nilsen,Sean Walkowiak,Richard D. Cuthbert,Ron Knox,Krysta Wiebe,Daoquan Xiang,Antje Rohde,Timothy Golds,Jana Čížková,Bala Ani Akpinar,Sezgi Biyiklioglu,Liangliang Gao,Amidou N’Daiye,Marie Kubaláková,Jan Šafář,Françoise Alfama,Anne-Françoise Adam-Blondon,Raphael Flores,Claire Guerche,Mikaël Loaec,Hadi Quesneville,Janet A. Condie,Jennifer Ens,Ron MacLachlan,Yifang Tan,Adriana Alberti,Jean-Marc Aury,Valérie Barbe,Arnaud Couloux,Corinne Cruaud,Karine Labadie,Sophie Mangenot,Patrick Wincker,Patrick Wincker,Gaganpreet Kaur,Ming-Cheng Luo,Sunish K. Sehgal,Parveen Chhuneja,O. P. Gupta,Suruchi Jindal,Parampreet Kaur,Palvi Malik,Priti Sharma,Bharat Yadav,Nagendra K. Singh,Jitendra P. Khurana,Chanderkant Chaudhary,Paramjit Khurana,Vinod Kumar,Ajay Kumar Mahato,Saloni Mathur,Amitha Mithra Sevanthi,Naveen Sharma,Ram Sewak Singh Tomar,Kateřina Holušová,Ondřej Plíhal,Matthew D. Clark,Matthew D. Clark,Darren Heavens,George Kettleborough,Jon Wright,Barbora Balcárková,Yuqin Hu,Elena A. Salina,Nikolai V. Ravin,Nikolai V. Ravin,Konstantin G. Skryabin,Konstantin G. Skryabin,Alexey V. Beletsky,Vitaly V. Kadnikov,Andrey V. Mardanov,Michail A. Nesterov,Andrey L. Rakitin,Ekaterina M. Sergeeva,Hirokazu Handa,Hiroyuki Kanamori,Satoshi Katagiri,Fuminori Kobayashi,Shuhei Nasuda,Tsuyoshi Tanaka,Jianzhong Wu,Federica Cattonaro,Min Jiumeng,Karl G. Kugler,Matthias Pfeifer,Simen Rød Sandve,Xu Xun,Bujie Zhan,Jacqueline Batley,Philipp E. Bayer,David Edwards,Satomi Hayashi,Zuzana Tulpová,Paul Visendi,Licao Cui,Xianghong Du,Kewei Feng,Xiaojun Nie,Wei Tong,Le Wang +207 more
TL;DR: This annotated reference sequence of wheat is a resource that can now drive disruptive innovation in wheat improvement, as this community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.
Journal ArticleDOI
Genome evolution in yeasts
Bernard Dujon,David James Sherman,Gilles Fischer,Pascal Durrens,Serge Casaregola,Ingrid Lafontaine,Jacky de Montigny,Christian Marck,Cécile Neuvéglise,Emmanuel Talla,Nicolas Goffard,Lionel Frangeul,Michel Aigle,Véronique Anthouard,Anna Babour,Valérie Barbe,Stéphanie Barnay,Sylvie Blanchin,Jean-Marie Beckerich,Emmanuelle Beyne,Claudine Bleykasten,Anita Boisramé,Jeanne Boyer,Laurence Cattolico,Fabrice Confanioleri,Antoine de Daruvar,Laurence Despons,Emmanuelle Fabre,Cécile Fairhead,Hélène Ferry-Dumazet,Alexis Groppi,Florence Hantraye,Christophe Hennequin,Nicolas Jauniaux,Philippe Joyet,Rym Kachouri,Alix Kerrest,Romain Koszul,Marc Lemaire,Isabelle Lesur,Laurence Ma,Héloïse Muller,Jean-Marc Nicaud,Macha Nikolski,Sophie Oztas,Odile Ozier-Kalogeropoulos,Stefan Pellenz,Serge Potier,Guy-Franck Richard,Marie-Laure Straub,Audrey Suleau,Dominique Swennen,Fredj Tekaia,Micheline Wésolowski-Louvel,Eric Westhof,Bénédicte Wirth,Maria Zeniou-Meyer,Ivan Zivanovic,Monique Bolotin-Fukuhara,Agnès Thierry,Christiane Bouchier,Bernard Caudron,Claude Scarpelli,Claude Gaillardin,Jean Weissenbach,Patrick Wincker,Jean-Luc Souciet +66 more
TL;DR: Analysis of chromosome maps and genome redundancies reveal that the different yeast lineages have evolved through a marked interplay between several distinct molecular mechanisms, including tandem gene repeat formation, segmental duplication, a massive genome duplication and extensive gene loss.
Journal ArticleDOI
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
Klaus F. X. Mayer,Jane Rogers,Jaroslav Doležel,Curtis J. Pozniak,Kellye Eversole,Catherine Feuillet,Bikram S. Gill,Bernd Friebe,Adam J. Lukaszewski,Pierre Sourdille,Takashi R. Endo,M. Kubaláková,Jarmila Číhalíková,Zdeňka Dubská,Jan Vrána,Romana Šperková,Hana Šimková,Melanie Febrer,Leah Clissold,Kirsten McLay,Kuldeep Singh,Parveen Chhuneja,Nagendra K. Singh,Jitendra P. Khurana,Eduard Akhunov,Frédéric Choulet,Adriana Alberti,Valérie Barbe,Patrick Wincker,Hiroyuki Kanamori,Fuminori Kobayashi,Takeshi Itoh,Takashi Matsumoto,Hiroaki Sakai,Tsuyoshi Tanaka,Jianzhong Wu,Yasunari Ogihara,Hirokazu Handa,P. Ron Maclachlan,Andrew G. Sharpe,Darrin Klassen,David Edwards,Jacqueline Batley,Odd-Arne Olsen,Simen Rød Sandve,Sigbjørn Lien,Burkhard Steuernagel,Brande B. H. Wulff,Mario Caccamo,Sarah Ayling,Ricardo H. Ramirez-Gonzalez,Bernardo J. Clavijo,Jonathan M. Wright,Matthias Pfeifer,Manuel Spannagl,Mihaela Martis,Martin Mascher,Jarrod Chapman,Jesse Poland,Uwe Scholz,Kerrie Barry,Robbie Waugh,Daniel S. Rokhsar,Gary J. Muehlbauer,Nils Stein,Heidrun Gundlach,Matthias Zytnicki,Véronique Jamilloux,Hadi Quesneville,Thomas Wicker,Primetta Faccioli,Moreno Colaiacovo,Antonio Michele Stanca,Hikmet Budak,Luigi Cattivelli,Natasha Glover,Lise Pingault,Etienne Paux,Sapna Sharma,Rudi Appels,Matthew I. Bellgard,Brett Chapman,Thomas Nussbaumer,Kai Christian Bader,Hélène Rimbert,Shichen Wang,Ron Knox,Andrzej Kilian,Michael Alaux,Françoise Alfama,Loïc Couderc,Nicolas Guilhot,Claire Viseux,Mikaël Loaec,Beat Keller,Sébastien Praud +95 more
TL;DR: Insight into the genome biology of a polyploid crop provide a springboard for faster gene isolation, rapid genetic marker development, and precise breeding to meet the needs of increasing food demand worldwide.
Journal ArticleDOI
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
Marie Touchon,Marie Touchon,Claire Hoede,Olivier Tenaillon,Valérie Barbe,Simon Baeriswyl,Philippe Bidet,Edouard Bingen,Stéphane Bonacorsi,Christiane Bouchier,Odile Bouvet,Alexandra Calteau,Hélène Chiapello,Olivier Clermont,Stéphane Cruveiller,Antoine Danchin,Médéric Diard,Carole Dossat,Meriem El Karoui,Eric Frapy,Louis Garry,Jean Marc Ghigo,Anne-Marie Gilles,James R. Johnson,James R. Johnson,Chantal Le Bouguénec,Mathilde Lescat,Sophie Mangenot,Vanessa Martinez-Jéhanne,Ivan Matic,Xavier Nassif,Sophie Oztas,Marie-Agnès Petit,Christophe Pichon,Zoé Rouy,Claude Saint Ruf,Dominique Schneider,Jérôme Tourret,Benoit Vacherie,David Vallenet,Claudine Médigue,Eduardo P. C. Rocha,Eduardo P. C. Rocha,Erick Denamur +43 more
TL;DR: An important adaptive role for metabolism diversification within group B2 and Shigella strains is found, but few or no extraint intestinal virulence-specific genes are identified, which could render difficult the development of a vaccine against extraintestinal infections.
Journal ArticleDOI
The Medicago genome provides insight into the evolution of rhizobial symbioses
Nevin D. Young,Frédéric Debellé,Frédéric Debellé,Giles E. D. Oldroyd,René Geurts,Steven B. Cannon,Steven B. Cannon,Michael K. Udvardi,Vagner A. Benedito,Klaus F. X. Mayer,Jérôme Gouzy,Jérôme Gouzy,Heiko Schoof,Yves Van de Peer,Sebastian Proost,Douglas R. Cook,Blake C. Meyers,Manuel Spannagl,Foo Cheung,Stéphane De Mita,Vivek Krishnakumar,Heidrun Gundlach,Shiguo Zhou,Joann Mudge,Arvind K. Bharti,Jeremy D. Murray,Marina Naoumkina,Benjamin D. Rosen,Kevin A. T. Silverstein,Haibao Tang,Stephane Rombauts,Patrick X. Zhao,Peng Zhou,Valérie Barbe,Philippe Bardou,Philippe Bardou,Michael Bechner,Arnaud Bellec,Anne Berger,Hélène Bergès,Shelby L. Bidwell,Ton Bisseling,Ton Bisseling,Nathalie Choisne,Arnaud Couloux,Roxanne Denny,Shweta Deshpande,Xinbin Dai,Jeff J. Doyle,Anne Marie Dudez,Anne Marie Dudez,Andrew Farmer,Stéphanie Fouteau,Carolien Franken,Chrystel Gibelin,Chrystel Gibelin,John Gish,Steven A. Goldstein,Alvaro J. González,Pamela J. Green,Asis Hallab,Marijke Hartog,Axin Hua,Sean Humphray,Dong-Hoon Jeong,Yi Jing,Anika Jöcker,Steve Kenton,Dong-Jin Kim,Dong-Jin Kim,Kathrin Klee,Hongshing Lai,Chunting Lang,Shaoping Lin,Simone L. Macmil,Ghislaine Magdelenat,Lucy Matthews,Jamison McCorrison,Erin L. Monaghan,Jeong Hwan Mun,Jeong Hwan Mun,Fares Z. Najar,Christine Nicholson,Céline Noirot,Majesta O'Bleness,Charles Paule,Julie Poulain,Florent Prion,Florent Prion,Baifang Qin,Chunmei Qu,Ernest F. Retzel,Claire Riddle,Erika Sallet,Erika Sallet,Sylvie Samain,Nicolas Samson,Nicolas Samson,Iryna Sanders,Olivier Saurat,Olivier Saurat,Claude Scarpelli,Thomas Schiex,Béatrice Segurens,Andrew J. Severin,D. Janine Sherrier,Ruihua Shi,Sarah Sims,Susan R. Singer,Senjuti Sinharoy,Lieven Sterck,Agnès Viollet,Bing Bing Wang,Keqin Wang,Mingyi Wang,Xiaohong Wang,Jens Warfsmann,Jean Weissenbach,Doug White,James D. White,Graham B. Wiley,Patrick Wincker,Yanbo Xing,Limei Yang,Ziyun Yao,Fu Ying,Jixian Zhai,Liping Zhou,Antoine Zuber,Antoine Zuber,Jean Dénarié,Jean Dénarié,Richard A. Dixon,Gregory D. May,David C. Schwartz,Jane Rogers,Francis Quetier,Christopher D. Town,Bruce A. Roe +138 more
TL;DR: The draft sequence of the M. truncatula genome sequence is described, a close relative of alfalfa (Medicago sativa), a widely cultivated crop with limited genomics tools and complex autotetraploid genetics, which provides significant opportunities to expand al falfa’s genomic toolbox.