Z
Zoé Rouy
Researcher at Centre national de la recherche scientifique
Publications - 52
Citations - 7392
Zoé Rouy is an academic researcher from Centre national de la recherche scientifique. The author has contributed to research in topics: Genome & Comparative genomics. The author has an hindex of 33, co-authored 50 publications receiving 6680 citations. Previous affiliations of Zoé Rouy include Université Paris-Saclay & Commissariat à l'énergie atomique et aux énergies alternatives.
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Journal ArticleDOI
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
Marie Touchon,Marie Touchon,Claire Hoede,Olivier Tenaillon,Valérie Barbe,Simon Baeriswyl,Philippe Bidet,Edouard Bingen,Stéphane Bonacorsi,Christiane Bouchier,Odile Bouvet,Alexandra Calteau,Hélène Chiapello,Olivier Clermont,Stéphane Cruveiller,Antoine Danchin,Médéric Diard,Carole Dossat,Meriem El Karoui,Eric Frapy,Louis Garry,Jean Marc Ghigo,Anne-Marie Gilles,James R. Johnson,James R. Johnson,Chantal Le Bouguénec,Mathilde Lescat,Sophie Mangenot,Vanessa Martinez-Jéhanne,Ivan Matic,Xavier Nassif,Sophie Oztas,Marie-Agnès Petit,Christophe Pichon,Zoé Rouy,Claude Saint Ruf,Dominique Schneider,Jérôme Tourret,Benoit Vacherie,David Vallenet,Claudine Médigue,Eduardo P. C. Rocha,Eduardo P. C. Rocha,Erick Denamur +43 more
TL;DR: An important adaptive role for metabolism diversification within group B2 and Shigella strains is found, but few or no extraint intestinal virulence-specific genes are identified, which could render difficult the development of a vaccine against extraintestinal infections.
Journal ArticleDOI
Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia
Eric Giraud,Lionel Moulin,David Vallenet,Valérie Barbe,Eddie Cytryn,Jean-Christophe Avarre,Marianne Jaubert,Damien Simon,Fabienne Cartieaux,Yves Prin,Gilles Béna,Laura Hannibal,Joël Fardoux,Mila Kojadinovic,Laurie Vuillet,Aurélie Lajus,Stéphane Cruveiller,Zoé Rouy,Sophie Mangenot,Béatrice Segurens,Carole Dossat,William L. Franck,Woo Suk Chang,Elizabeth Saunders,David Bruce,Paul G. Richardson,Philippe Normand,Bernard Dreyfus,David Pignol,Gary Stacey,David W. Emerich,André Verméglio,Claudine Médigue,Michael J. Sadowsky +33 more
TL;DR: It is shown by complete genome sequencing of two symbiotic, photosynthetic, Bradyrhizobium strains, BTAi1 and ORS278, that canonical nodABC genes and typical lipochito-oligosaccharidic Nod factors are not required for symbiosis in some legumes.
Journal ArticleDOI
MaGe: a microbial genome annotation system supported by synteny results
David Vallenet,Laurent Labarre,Zoé Rouy,Valérie Barbe,Stéphanie Bocs,Stéphane Cruveiller,Aurélie Lajus,Géraldine Pascal,Claude Scarpelli,Claudine Médigue +9 more
TL;DR: MaGe integration of annotation data from bacterial genomes enhanced by a gene coding re-annotation process using accurate gene models, integration of results obtained with a wide range of bioinformatics methods and an advanced web interface allowing multiple users to refine the automatic assignment of gene product functions.
Journal ArticleDOI
Coping with cold: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
Claudine Médigue,Evelyne Krin,Géraldine Pascal,Valérie Barbe,Andreas Bernsel,Philippe N. Bertin,Frankie Cheung,Stéphane Cruveiller,Salvino D'Amico,Angela Duilio,Gang Fang,Georges Feller,Christine Ho,Sophie Mangenot,Gennaro Marino,Johan Nilsson,Ermenegilda Parrilli,Eduardo P. C. Rocha,Zoé Rouy,Agnieszka Sekowska,Maria Luisa Tutino,David Vallenet,Gunnar von Heijne,Antoine Danchin +23 more
TL;DR: The analysis of the genome sequence of the fast growing Antarctica bacterium Pseudoalteromonas haloplanktis TAC125 finds that it copes with the increased solubility of oxygen at low temperature by multiplying dioxygen scavenging while deleting whole pathways producing reactive oxygen species.
Journal ArticleDOI
MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
David Vallenet,Eugeni Belda,Alexandra Calteau,Stéphane Cruveiller,Stefan Engelen,Aurélie Lajus,François Le Fèvre,Cyrille Longin,Damien Mornico,David Roche,Zoé Rouy,Gregory Salvignol,Claude Scarpelli,Adam Alexander T. Smith,Marion Weiman,Claudine Médigue +15 more
TL;DR: Improved data browsing and searching tools have been added, original tools useful in the context of expert annotation have been developed and integrated and the website has been significantly redesigned to be more user-friendly.