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Showing papers in "Ecological Monographs in 2022"


Journal ArticleDOI
TL;DR: In this paper , the authors considered that climate warming is among the most serious of anthropogenic stresses to the environment, because it not only has direct effects on biodiversity but also has indirect effects on humans.
Abstract: Climate warming is considered to be among the most serious of anthropogenic stresses to the environment, because it not only has direct effects on biodiversity

33 citations


Journal ArticleDOI
TL;DR: In this article , an irrigation experiment in the Pfynwald, Switzerland from 2003-2018 was conducted to investigate how different traits and functions of individual trees and the whole ecosystem responded to increased water availability, and how the patterns and magnitudes of these responses developed over time.
Abstract: Climate change exposes ecosystems to strong and rapid changes in their environmental boundary conditions mainly due to the altered temperature and precipitation patterns. It is still poorly understood how fast interlinked ecosystem processes respond to altered environmental conditions, if these responses occur gradually or suddenly when thresholds are exceeded, and if the patterns of the responses will reach a stable state. We conducted an irrigation experiment in the Pfynwald, Switzerland from 2003-2018. A naturally dry Scots pine (Pinus sylvestris L.) forest was irrigated with amounts that doubled natural precipitation, thus releasing the forest stand from water limitation. The aim of this study was to provide a quantitative understanding on how different traits and functions of individual trees and the whole ecosystem responded to increased water availability, and how the patterns and magnitudes of these responses developed over time. We found that the response magnitude, the temporal trajectory of responses, and the length of initial lag period prior to significant response largely varied across traits. We detected rapid and stronger responses from above-ground tree traits (e.g., tree-ring width, needle length, and crown transparency) compared to below-ground tree traits (e.g., fine root biomass). The altered above-ground traits during the initial years of irrigation increased the water demand and trees adjusted by increasing root biomass during the later years of irrigation, resulting in an increased survival rate of Scots pine trees in irrigated plots. The irrigation also stimulated ecosystem-level foliar decomposition rate, fungal fruit body biomass, and regeneration abundances of broadleaved tree species. However, irrigation did not promote the regeneration of Scots pine trees which are reported to be vulnerable to extreme droughts. Our results provide extensive evidence that treeand ecosystem-level responses were pervasive across a number of traits on long-term temporal scales. However, after reaching a peak, the magnitude of these responses either decreased or reached a new stable state, providing important insights into how resource alterations could change the system functioning and its boundary conditions.

12 citations


Journal ArticleDOI
TL;DR: In this article , the authors investigate thermal acclimation of three species of Takydromus lizards distributed along a broad latitudinal gradient in China, by studying metabolic modifications at the level of the whole organism, organ, mitochondria, metabolome, and proteome.
Abstract: Patterns in functional diversity of organisms at large spatial scales can provide insight into possible responses to future climate change, but it remains a challenge to link large-scale patterns at the population or species level to their underlying physiological mechanisms at the individual level. The climate variability hypothesis predicts that temperate ectotherms will be less vulnerable to climate warming than tropical ectotherms, due to their superior acclimatization capacity. However, metabolic acclimatization occurs over multiple levels, from the enzyme and cellular level, through organ systems, to whole-organism metabolic rate (hereafter biological hierarchy). Previous studies have focused on one or a few levels of the biological hierarchy, leaving us without a general understanding of how metabolic acclimatization might differ between tropical and temperate species. Here, we investigate thermal acclimation of three species of Takydromus lizards distributed along a broad latitudinal gradient in China, by studying metabolic modifications at the level of the whole organism, organ, mitochondria, metabolome, and proteome. As predicted by the climate variability hypothesis, the two temperate species T. septentrionalis and T. wolteri had an enhanced acclimation response at the whole organism level compared to the tropical species T. sexlineatus, as measured by respiratory gas exchange rates. However, the mechanisms by which whole organism performance was modified was strikingly different in the two temperate species: widespread T. septentrionalis modified organ sizes, while the narrowly distributed T. wolteri relied on mitochondrial, proteomic and metabolomic regulation. We suggest that these two mechanisms of thermal acclimatization may represent general strategies used by ectotherms, with distinct ecological costs and benefits. Lacking either of these mechanisms of thermal acclimatization capacity, the tropical species is likely to have increased vulnerability to climate change.

11 citations


Journal ArticleDOI
TL;DR: In this paper , a meta-analysis of TDF-δ13C and TDFδ15N for mammals and quantified variation in relation to consumer type (herbivores, omnivore, carnivore) and diet source (C3-based, C4-based or marine-based mixture).
Abstract: Stable isotope analysis is increasingly being used to assess diet and trophic positions of animals. Such assessments require estimates of trophic discrimination factors (TDFs)—offset between the isotopic composition of diet and animal tissues—with imprecise applications of TDFs leading to biased conclusions in resource use. Because TDFs are unavailable for most species, ecologists often apply values from taxonomically similar species or use trophic step increases of approximately 1‰ for carbon (TDF-δ13C) and 3‰ for nitrogen (TDF-δ15N). Such practices may yield inaccuracies since TDFs vary greatly, even within a species. To better understand the factors that influence TDFs, we conducted a meta-analysis of TDF-δ13C and TDF-δ15N for mammals and quantified variation in relation to consumer type (herbivore, omnivore, carnivore) and diet source (C3-based, C4-based, marine-based, mixture). Additionally, to guide TDF choice, we used an isotopic data set of small mammal tissues and diet items to assess how predicted dietary contributions vary with TDFs estimated using (1) taxonomic relatedness, (2) consumer type and diet source, or (3) values derived from wild animals eating natural diets. Our meta-analysis revealed that metabolic routing and interactions between consumer class, dietary source, and the protein versus energy content of diets best explained variation in TDF-δ13C values (−1.5‰ to 7.3‰), whereas consumer class best explained variation in TDF-δ15N values (−0.5‰ to 7.1‰). Our test of methods to estimate TDFs indicated that ecologists should avoid relying on taxonomic relatedness when selecting TDF-δ13C because mixed-diet lab studies may produce misleading results for herbivores and omnivores. Additionally, field-derived estimates could help fill TDF gaps where diets within a consumer class are absent. Overall, we suggest that using standard TDF trophic step values should be abandoned, because feeding studies are often poor proxies for natural diets, particularly for herbivores and omnivores. Instead, we make recommendations on how to select TDFs, along with a range of TDF-δ13C and TDF-δ15N values depending on diet source, consumer class, and tissue type. Use of these more refined recommendations and TDF values in isotopic assessments will improve estimates of diets and trophic interactions in natural systems, leading to a better understanding of ecological interactions and communities.

10 citations


Journal ArticleDOI
TL;DR: In this article , the authors introduce disease-mediated nutrient dynamics (DND) as a framework to describe the multiple concurrent pathways linking elemental cycles with infectious disease and illustrate the impact of disease-ecosystem feedback loops on both disease and ecosystem nutrient dynamics using a simple mathematical model.
Abstract: Autotrophs play an essential role in the cycling of carbon and nutrients, yet disease-ecosystem relationships are often overlooked in these dynamics. Importantly, the availability of elemental nutrients like nitrogen and phosphorus impacts infectious disease in autotrophs, and disease can induce reciprocal effects on ecosystem nutrient dynamics. Relationships linking infectious disease with ecosystem nutrient dynamics are bidirectional, though the interdependence of these processes has received little attention. We introduce disease-mediated nutrient dynamics (DND) as a framework to describe the multiple, concurrent pathways linking elemental cycles with infectious disease. We illustrate the impact of disease–ecosystem feedback loops on both disease and ecosystem nutrient dynamics using a simple mathematical model, combining approaches from classical ecological (logistic and Droop growth) and epidemiological (susceptible and infected compartments) theory. Our model incorporates the effects of nutrient availability on the growth rates of susceptible and infected autotroph hosts and tracks the return of nutrients to the environment following host death. While focused on autotroph hosts here, the DND framework is generalizable to higher trophic levels. Our results illustrate the surprisingly complex dynamics of host populations, infection patterns, and ecosystem nutrient cycling that can arise from even a relatively simple feedback between disease and nutrients. Feedback loops in disease-mediated nutrient dynamics arise via effects of infection and nutrient supply on host stoichiometry and population size. Our model illustrates how host growth rate, defense, and tissue chemistry can impact the dynamics of disease–ecosystem relationships. We use the model to motivate a review of empirical examples from autotroph–pathogen systems in aquatic and terrestrial environments, demonstrating the key role of nutrient–disease and disease–nutrient relationships in real systems. By assessing existing evidence and uncovering data gaps and apparent mismatches between model predictions and the dynamics of empirical systems, we highlight priorities for future research intended to narrow the persistent disciplinary gap between disease and ecosystem ecology. Future empirical and theoretical work explicitly examining the dynamic linkages between disease and ecosystem ecology will inform fundamental understanding for each discipline and will better position the field of ecology to predict the dynamics of disease and elemental cycles in the context of global change.

8 citations


Journal ArticleDOI
TL;DR: The authors showed that a theoretically unlimited number of coexisting species can be maintained by allocational trade-offs such as investing in light-harvesting organs versus height growth, investing in reproduction versus growth or survival versus growth.
Abstract: Although early theoretical work suggests that competition for light erodes successional diversity in forests, verbal models and recent numerical work with complex mechanistic forest simulators suggest that disturbance in such systems can maintain successional diversity. Nonetheless, if and how allocation trade-offs between competitors interact with disturbance to maintain high diversity in successional systems remains poorly understood. Here, using mechanistic and analytically tractable models, we show that a theoretically unlimited number of coexisting species can be maintained by allocational trade-offs such as investing in light-harvesting organs versus height growth, investing in reproduction versus growth or survival versus growth. The models describe the successional dynamics of a forest composed of many patches subjected to random or periodic disturbance, and are consistent with physiologically mechanistic terrestrial ecosystem models, including the terrestrial components of recent Earth System Models. We show that coexistence arises in our models because species specialize in the successional time they best exploit the light environment and convert resources into seeds or contribute to advance regeneration. We also show that our results are relevant to non-forested ecosystems by demonstrating the emergence of similar dynamics in a mechanistic model of competition for light among annual plant species. Finally, we show that coexistence in our models is relatively robust to the introduction of intraspecific variability that weakens the competitive hierarchy caused by asymmetric competition for light.

8 citations


Journal ArticleDOI
TL;DR: In this paper , the authors used data from an 11-year study monitoring the breeding of Tree Swallows and the availability of Diptera (their main prey) across a gradient of agricultural intensification in southern Québec, Canada.
Abstract: Aerial insectivores show worldwide population declines coinciding with shifts in agricultural practices. Increasing reliance on certain agricultural practices is thought to have led to an overall reduction in insect abundance that negatively affects aerial insectivore fitness. The relationship between prey availability and the fitness of insectivores may thus vary with the extent of agricultural intensity. It is therefore imperative to quantify the strength and direction of these associations. Here we used data from an 11-year study monitoring the breeding of Tree Swallows (Tachycineta bicolor) and the availability of Diptera (their main prey) across a gradient of agricultural intensification in southern Québec, Canada. This gradient was characterized by a shift in agricultural production, whereby landscapes composed of forage and pastures represented less agro-intensive landscapes and those focusing on large-scale arable row crop monocultures, such as corn (Zea mays) or soybean (Glycine max) that are innately associated with significant mechanization and agro-chemical inputs, represented more agro-intensive landscapes. We evaluated the landscape characteristics affecting prey availability, and how this relationship influences the fledging success, duration of the nestling period, fledgling body mass, and wing length as these variables are known to influence the population dynamics of this species. Diptera availability was greatest within predominately forested landscapes, while within landscapes dominated by agriculture, it was marginally greater in less agro-intensive areas. Of the measured fitness and body condition proxies, both fledging success and nestling body mass were positively related to prey availability. The impact of prey availability varied across the agricultural gradient as fledging success improved with increasing prey levels within forage landscapes yet declined in more agro-intensive landscapes. Finally, after accounting for prey availability, fledging success was lowest, nestling periods were the longest, and wing length of fledglings were shortest within more agro-intensive landscapes. Our results highlight the interacting roles that aerial insect availability and agricultural intensification have on the fitness of aerial insectivores, and by extension how food availability may interact with other aspects of breeding habitats to influence the population dynamics of predators.

7 citations


Journal ArticleDOI
TL;DR: In this article , a conceptual framework using trait-based inference of ecological processes is proposed to improve our understanding of network assembly and our ability to predict network reassembly amid global change.
Abstract: The study of ecological networks has progressively evolved from a mostly descriptive science to one that attempts to elucidate the processes governing the emerging structure of multitrophic communities. To move forward, we propose a conceptual framework using trait-based inference of ecological processes to improve our understanding of network assembly and our ability to predict network reassembly amid global change. The framework formalizes the view that network assembly is governed by processes shaping the composition of resource and consumer communities within trophic levels and those dictating species’ interactions between trophic levels. To illustrate the framework and show its applicability, we (1) use simulations to explore network structures emerging from the interactions of these assembly processes, (2) develop a null model approach to infer the processes underlying network assembly from observational data, and (3) use the null model approach to quantify the relative influence of bottom-up (resource-driven) and top-down (consumer-driven) assembly modes on plant–frugivore networks along an elevational gradient. Simulations suggest that assembly processes governing the formation of pairwise interactions have a greater influence on network structure than those governing the composition of communities within trophic levels. Our case study further shows that the mode of network assembly along the gradient is mainly bottom-up controlled, suggesting that the filtering of plant traits has a larger effect on network structure relative to the filtering of frugivore traits. Combined with increasingly available trait and interaction data, the framework provides a timely toolbox to infer assembly processes operating within and between trophic levels and to test competing hypotheses about the assembly mode of resource–consumer networks along environmental gradients and among biogeographic regions. It is a step toward a more process-based network ecology and complete integration of multitrophic interactions in the prediction of future biodiversity.

7 citations


Journal ArticleDOI
TL;DR: In this paper , the authors examined the effects of rainfall on colony survival and recruitment of the local neighborhood of conspecific neighbors, using Voronoi polygons as a measure of a colony's foraging area.
Abstract: Changing climatic conditions are shaping how density mediates resource competition. Colonies of the seed-eating red harvester ant, Pogonomyrmex barbatus , live for about 30 years in desert grassland. They compete with conspecific neighbors for foraging area in which to search for seeds. This study draws on a long-term census of a population of about 300 colonies from 1988 to 2019 at a site near Rodeo, New Mexico, USA. Rainfall was high in the first decade of the study, and then declined as a severe drought began in about 2001 – 2003. We examine the effects on colony survival and recruitment of the spatial configuration of the local neighborhood of conspecific neighbors, using Voronoi polygons as a measure of a colony ’ s foraging area, and consider how changing rainfall influences the effects of local neighborhoods. The results show that a colony ’ s chances of surviving to the next year depend on its age and on the foraging area available in its local neighborhood. Recruitment, measured as a founding colony ’ s chance of surviving to be 1 year old, depends on rainfall. In the earlier years of the study, when rainfall was high, colony numbers increased, and then began to decline after about 1997 – 1999, apparently due to crowding. As rainfall decreased, beginning in about 2001 – 2003, recruitment declined, and so did colony survival, leading to a trend toward earlier colony death which was most pronounced in 2016. As rainfall declined, apparently decreasing food availability, more foraging area was needed to sus-tain a colony: although the number of colonies declined, the impact of crowding by intraspecific neighbors increased. These processes maintain overdispersion on the scale of about 8 m, with transient clustering at larger spatial scales. In addition, other factors besides crowding, such

7 citations


Journal ArticleDOI
TL;DR: In this article , temperature variability in aspen canopies, Populus tremuloides, and its consequences for a common herbivore, the leaf-mining caterpillar Phyllocnistis populiella, were examined.
Abstract: In tree canopies, incoming solar radiation interacts with leaves and branches to generate temperature differences within and among leaves, presenting thermal opportunities and risks for leaf-dwelling ectotherms. Although leaf biophysics and insect thermal ecology are well understood, few studies have examined them together in single systems. We examined temperature variability in aspen canopies, Populus tremuloides, and its consequences for a common herbivore, the leaf-mining caterpillar Phyllocnistis populiella. We shaded leaves in the field and measured effects on leaf temperature and larval growth and survival. We also estimated larval thermal performance curves for feeding and growth and measured upper lethal temperatures. Sunlit leaves directly facing the incoming rays reached the highest temperatures, typically 3 – 8 °C above ambient air temperature. Irradiance driven increases in temperatures, however, were transient enough that they did not alter observed growth rates of leaf miners. Incubator and ramping experiments suggested that larval performance peaks between 25 and 32 °C and declines to zero between 35 and 40 °C, depending on duration of temperature exposure. Upper lethal temperatures during one-hour heat shocks were 42 – 43 °C. When larvae were active in early spring, temperatures generally were low enough to depress rates of feeding and growth below their maxima, and only rarely did estimated mine temperatures rise beyond optimal temperatures. Observed leaf or mine temperatures never approached larval upper lethal temperatures. At this site during our experiments, larvae thus appeared to have a significant thermal safety margin; the more pressing problem was inadequate heat. Detailed information on mine temperatures and larval performance curves, however, allowed us to leverage long-term data sets on air temperature to estimate potential future shifts in performance and longer-term risks to larvae from lethally high temperatures. This analysis suggests that, in the past 20 years, larval performance has often been limited by cold and that the risk of heat stress has been low. Future warming will raise mean rates of feeding and growth but also the risk of exposure to injuriously or lethally high temperatures.

7 citations


Journal ArticleDOI
TL;DR: In this paper , the authors analyzed spatiotemporal variation in the effect of the 2015-2016 El Niño and the overlapping 2014-2016 East Pacific MHW on three intertidal kelp populations.
Abstract: El Niños and marine heatwaves (MHWs) are predicted to increase in frequency under greenhouse warming. The impact of climate oscillations like El Niño-Southern Oscillation on coastal environments in the short term likely mimics those of climate change in the long term; therefore, El Niños may serve as a short-term proxy for possible long-term ecological responses to an increasingly variable climate. Understanding and prediction of ecosystem responses requires elucidating the mechanisms underlying different organizational scales (organism, space, and time). We analyzed spatiotemporal variation in the effect of the 2015–2016 El Niño and the overlapping 2014–2016 East Pacific MHW on three intertidal kelps (Hedophyllum sessile, Egregia menziesii, and Postelsia palmaeformis) at seven sites across 300 km of the Oregon coast and over three years post El Niño. We measured percent cover, density, maximum length, growth, and carbon : nitrogen (C:N) ratios monthly in spring/summer at each site from 2016 through 2018. Results revealed a complex interplay between spatial, temporal, and biological factors that modified the effects of these thermal anomalies on Oregon intertidal kelp populations. Our findings generally agree with prior literature showing detrimental effects of El Niño on kelp. However, El Niño and possibly MHW effects can be mitigated or amplified by environmental processes and kelp life history strategies. In our study, coastal upwelling provided regional relief for the kelp individuals with respect to their growth needs and mitigated the adverse effects of warming. On the other hand, we also found that coastal upwelling amplified, or compounded, detrimental effects of El Niño by increasing phytoplankton-induced shading and mollusk grazing on juvenile and adult kelps, thereby reducing their density. Given the greater uncertainty associated with warming events and climate change in the California Current Upwelling System and its biological implications, our findings reiterate the importance of acquiring better understanding of how context-specific underlying conditions modify ecosystem processes. More specifically, understanding how demographic traits and life history stages of kelp change with biological interactions and environmental forcing over temporal and spatial scales is crucial to anticipating future climate change ramifications.

Journal ArticleDOI
TL;DR: In this article , the authors used 15N isotope dilution field experiments in New York, Oregon, and Hawaii to determine SNF strategies in six N-fixing tree symbioses.
Abstract: Symbiotic nitrogen fixation (SNF) is a key ecological process whose impact depends on the strategy of SNF regulation—the degree to which rates of SNF change in response to limitation by N versus other resources. SNF that is obligate or exhibits incomplete downregulation can result in excess N fixation, whereas a facultative SNF strategy does not. We hypothesized that tree-based SNF strategies differed by latitude (tropical vs. temperate) and symbiotic type (actinorhizal vs. rhizobial). Specifically, we expected tropical rhizobial symbioses to display strongly facultative SNF as an explanation of their success in low-latitude forests. In this study we used 15N isotope dilution field experiments in New York, Oregon, and Hawaii to determine SNF strategies in six N-fixing tree symbioses. Nitrogen fertilization with +10 and +15 g N m−2 year−1 for 4–5 years alleviated N limitation in all taxa, paving the way to determine SNF strategies. Contrary to our hypothesis, all six of the symbioses we studied sustained SNF even at high N. Robinia pseudoacacia (temperate rhizobial) fixed 91% of its N (%Ndfa) in controls, compared to 64% and 59% in the +10 and +15 g N m−2 year−1 treatments. For Alnus rubra (temperate actinorhizal), %Ndfa was 95%, 70%, and 60%. For the tropical species, %Ndfa was 86%, 80%, and 82% for Gliricidia sepium (rhizobial); 79%, 69%, and 67% for Casuarina equisetifolia (actinorhizal); 91%, 42%, and 67% for Acacia koa (rhizobial); and 60%, 51%, and 19% for Morella faya (actinorhizal). Fertilization with phosphorus did not stimulate tree growth or SNF. These results suggest that the latitudinal abundance distribution of N-fixing trees is not caused by a shift in SNF strategy. They also help explain the excess N in many forests where N fixers are common.

Journal ArticleDOI
TL;DR: In this paper , the authors provide a comprehensive, accessible review that explains important technical aspects of cross validation for model selection, such as bias correction, estimation uncertainty, choice of scores, and selection rules to mitigate overfitting.
Abstract: Specifying, assessing, and selecting among candidate statistical models is fundamental to ecological research. Commonly used approaches to model selection are based on predictive scores and include information criteria such as Akaike's information criterion, and cross validation. Based on data splitting, cross validation is particularly versatile because it can be used even when it is not possible to derive a likelihood (e.g., many forms of machine learning) or count parameters precisely (e.g., mixed-effects models). However, much of the literature on cross validation is technical and spread across statistical journals, making it difficult for ecological analysts to assess and choose among the wide range of options. Here we provide a comprehensive, accessible review that explains important—but often overlooked—technical aspects of cross validation for model selection, such as: bias correction, estimation uncertainty, choice of scores, and selection rules to mitigate overfitting. We synthesize the relevant statistical advances to make recommendations for the choice of cross-validation technique and we present two ecological case studies to illustrate their application. In most instances, we recommend using exact or approximate leave-one-out cross validation to minimize bias, or otherwise k-fold with bias correction if k < 10. To mitigate overfitting when using cross validation, we recommend calibrated selection via our recently introduced modified one-standard-error rule. We advocate for the use of predictive scores in model selection across a range of typical modeling goals, such as exploration, hypothesis testing, and prediction, provided that models are specified in accordance with the stated goal. We also emphasize, as others have done, that inference on parameter estimates is biased if preceded by model selection and instead requires a carefully specified single model or further technical adjustments.


Journal ArticleDOI
TL;DR: In this article , the authors explored whether parasites are important in kelp forests by examining their effects on a high-quality, high-resolution kelp-forest food web and found that parasites increased the trophic span of the web, increasing top predator vulnerability and the longest chain length.
Abstract: Abstract We explored whether parasites are important in kelp forests by examining their effects on a high‐quality, high‐resolution kelp‐forest food web. After controlling for generic effects of network size, parasites affected kelp‐forest food web structure in some ways consistent with other systems. Parasites increased the trophic span of the web, increasing top predator vulnerability and the longest chain length. Unique links associated with parasites, such as concomitant predation (consumption of parasites along with their hosts by predators) increased the frequency of network motifs involving mutual consumption and decreased niche contiguity of free‐living species. However, parasites also affected kelp‐forest food web structure in ways not seen in other systems. Kelp‐forest parasites are richer and more specialized than other systems. As a result, parasites reduced diet generality and decreased connectance in the kelp forest. Although mutual consumption motifs increased in frequency, this motif type was still a small fraction of all possible motifs, so their increase in frequency was not enough to compensate for the decrease in connectance caused by adding many specialist parasite species.

Journal ArticleDOI
TL;DR: In this paper , the authors apply the theory of ecological communities (TEC) conceptual framework to stream ecosystems to focus explicitly on the core ecological processes structuring communities: dispersal, speciation, niche selection, and ecological drift.
Abstract: A major goal of community ecology is understanding the processes responsible for generating biodiversity patterns along spatial and environmental gradients. In stream ecosystems, system-specific conceptual frameworks have dominated research describing biodiversity change along longitudinal gradients of river networks. However, support for these conceptual frameworks has been mixed, mainly applicable to specific stream ecosystems and biomes, and these frameworks have placed less emphasis on general mechanisms driving biodiversity patterns. Rethinking biodiversity patterns and processes in stream ecosystems with a focus on the overarching mechanisms common across ecosystems will provide a more holistic understanding of why biodiversity patterns vary along river networks. In this study, we apply the theory of ecological communities (TEC) conceptual framework to stream ecosystems to focus explicitly on the core ecological processes structuring communities: dispersal, speciation, niche selection, and ecological drift. Using a unique case study from high-elevation networks of connected lakes and streams, we sampled stream invertebrate communities in the Sierra Nevada, California, USA to test established stream ecology frameworks and compared them with the TEC framework. Local diversity increased and β-diversity decreased moving downstream from the headwaters, consistent with the river continuum concept and the small but mighty framework of mountain stream biodiversity. Local diversity was also structured by distance below upstream lakes, where diversity increased with distance below upstream lakes, in support of the serial discontinuity concept. Despite some support for the biodiversity patterns predicted from the stream ecology frameworks, no single framework was fully supported, suggesting “context dependence.” By framing our results under the TEC, we found that species diversity was structured by niche selection, where local diversity was highest in environmentally favorable sites. Local diversity was also highest in sites with small community sizes, countering the predicted effects of ecological drift. Moreover, higher β-diversity in the headwaters was influenced by dispersal and niche selection, where environmentally harsh and spatially isolated sites exhibit higher community variation. Taken together our results suggest that combining system-specific ecological frameworks with the TEC provides a powerful approach for inferring the mechanisms driving biodiversity patterns and provides a path toward generalization of biodiversity research across ecosystems.

Journal ArticleDOI
TL;DR: In this article , the authors calculated diversity effects for three functions: aboveground biomass, insect herbivory and pathogen infection, the latter two as proxies for energy transfer to higher trophic levels, in a grassland experiment.
Abstract: Biodiversity effects on ecosystem functioning can be partitioned into complementarity effects, driven by many species, and selection effects, driven by few. Selection effects occur through interspecific abundance shifts (dominance) and intraspecific shifts in functioning. Complementarity and selection effects are often calculated for biomass, but very rarely for secondary productivity, that is, energy transfer to higher trophic levels. We calculated diversity effects for three functions: aboveground biomass, insect herbivory and pathogen infection, the latter two as proxies for energy transfer to higher trophic levels, in a grassland experiment (PaNDiv) manipulating species richness, functional composition, nitrogen enrichment, and fungicide treatment. Complementarity effects were, on average, positive and selection effects negative for biomass production and pathogen infection and multiple species contributed to diversity effects in mixtures. Diversity effects were, on average, less pronounced for herbivory. Diversity effects for the three functions were not correlated, because different species drove the different effects. Benefits (and costs) from growing in diverse communities, be it reduced herbivore or pathogen damage or increased productivity either due to abundance increases or increased productivity per area were distributed across different plant species, leading to highly variable contributions of single species to effects of diversity on different functions. These results show that different underlying ecological mechanisms can result in similar overall diversity effects across functions.

Journal ArticleDOI
TL;DR: In this paper , the authors compared inter-annual and seasonal patterns of anthrax infections in two multihost systems in southern Africa: Etosha National Park, Namibia, and Kruger National Park in South Africa.
Abstract: Environmental factors are common forces driving infectious disease dynamics. We compared inter-annual and seasonal patterns of anthrax infections in two multihost systems in southern Africa: Etosha National Park, Namibia, and Kruger National Park, South Africa. Using several decades of mortality data from each system, we assessed possible transmission mechanisms behind anthrax dynamics, examining 1) within- and between-species temporal case correlations, and 2) associations between anthrax mortalities and environmental factors, specifically rainfall and the Normalized Difference Vegetation Index (NDVI), with empirical dynamic modeling. Anthrax cases in Kruger had wide inter-annual variation in case numbers, and large outbreaks seemed to follow roughly a decadal cycle. In contrast, outbreaks in Etosha were smaller in magnitude and occurred annually. In Etosha, the host species commonly affected remained consistent over several decades, although plains zebra (Equus quagga) became relatively more dominant. In Kruger, turnover of the main host species occurred after the 1990s, where the previously dominant host species, greater kudu (Tragelaphus strepsiceros), was replaced by impala (Aepyceros melampus). In both parks, anthrax infections showed two seasonal peaks, with each species having only one peak in a year. Zebra, springbok (Antidorcas marsupialis), wildebeest (Connochaetes taurinus) and impala cases peaked in wet seasons, while elephant (Loxodonta africana), kudu and buffalo (Syncerus caffer) cases peaked in dry seasons. For common host species shared between the two parks, anthrax mortalities peaked in the same season in both systems. Among host species with cases peaking in the same season, anthrax mortalities were mostly synchronized, which may imply similar transmission mechanisms or shared sources of exposure. Between seasons, outbreaks in one species may contribute to more cases in another species in the following season. Higher vegetation greenness was associated with more zebra and springbok anthrax mortalities in Etosha, but fewer elephant cases in Kruger. These results suggest that host behavioral responses to changing environmental conditions may affect anthrax transmission risk, with differences in transmission mechanisms leading to multihost biseasonal outbreaks. This study reveals the dynamics and potential environmental drivers of anthrax in two savanna systems, providing a better understanding of factors driving biseasonal dynamics and outbreak variation among locations.

Journal ArticleDOI
TL;DR: In this paper , a longitudinal survey of 800 saplings distributed along eight 1-km transects spanning woodland-grassland transitions in Serengeti National Park was conducted.
Abstract: Savanna tree cover often exhibits sudden discontinuities across space. It has been proposed that local spatial processes imposed by variation in tree cover itself (as opposed to by external drivers such as edaphic variation) can reinforce such discontinuities. Despite this, we generally lack data on tree demography and the environmental drivers affecting the former as a function of tree neighborhoods in these systems. Given the importance of disturbance traps in savannas, spatial processes affecting the likelihood of escape from the seedling/sapling stage to the adult tree stage are likely to be critical. In a longitudinal survey of 800 saplings distributed along eight 1-km transects spanning woodland–grassland transitions in Serengeti National Park, we found a positive association between tree cover and sapling growth and survival, but no relationship with sapling abundance, maximum tree height, disturbance, or topkill. Based on microclimate and soil moisture dynamics data, we found no evidence to suggest that tree cover itself drives variation in growth. Based on a prior analysis of soil properties along these transects, we hypothesized that underlying edaphic conditions may be responsible for variation in growth. Regardless of the underlying mechanism, we used simulations to show that subtle growth rate gradients interacted with intense disturbance regimes to produce sharp discontinuities in tree cover, with strong demographic bottlenecks where growth is slowest, explaining the observed patterns of tree cover along the transects. Our results indicated that disturbance and herbivory are equally intense in areas of high and low tree cover, and that although trees have the potential to successfully establish and reach adulthood in open, grassy sites, they grow too slowly to escape disturbance traps there. Importantly, we showed that although herbivory and fire are fundamental for explaining savanna structural patterns, their effects are not necessarily reinforced by tree cover itself.

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TL;DR: In this paper , the authors combine experimental work with thermal performance curves (TPC) theory to assess if the current hypotheses apply equally to closely related taxa, and conclude that superficially the "hotter is not better" hypothesis is best but that the mechanistic theory underlying it cannot apply at the genus level: trends are likely to arise from little rather than substantial adaptation.
Abstract: Temperature drives performance and therefore adaptation; to interpret and understand these, thermal performance curves (TPC) are used, often through meta-analyses, revealing trends across divergent taxa. Four discrete hypotheses—thermodynamic-constraint; biochemical-adaptation (hotter is not better); specialist-generalist; thermal-trade-off—have arisen to explain cross-phyletic trends. In contrast, detailed comparisons of closely related taxa are rare, yet trends arising from these should reveal mechanisms of adaptation, as taxa diverge. Here, we combine experimental work with TPC theory to assess if the current hypotheses apply equally to closely related taxa. We established TPC for six species (and two strains of one species) of the animal model Tetrahymena (Ciliophora)—characterized by SSU rDNA/COX1 sequences—by examining specific growth rate (r), size (V), production (P = rV), and metabolic rate (rV−0.25) across 15–20 temperatures. Using parameters derived from the mechanistic “Sharpe and DeMichele” function, we established a framework to test which hypothesis best represented the data. We conclude that superficially the “hotter is not better” hypothesis is best but argue that the mechanistic theory underlying it cannot apply at the genus level: trends are likely to arise from little rather than substantial adaptation. Our further analysis suggests: (1) upward shift in the maximum-functioning temperature (Tmax) is more constrained than the optimal temperature (Topt), leading to a decreased safety margin (Topt−Tmax) and suggesting that species initially succeed in warmer environments through an increase in Topt, followed by increasing Tmax; and (2) thermal performance traits are correlated with phylogeny for closely related species, suggesting that species gradually adapt to new thermal environments.


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TL;DR: This article found that non-native populations are better defended than ancestral populations in a semi-arid system and that nonnative populations were, overall, superior at suppressing locals relative to ancestral populations under low water conditions.
Abstract: The evolution of increased competitive ability (EICA) hypothesis encapsulates the importance of evolution and ecology for biological invasions. According to this proposition, leaving specialist herbivores at home frees introduced plant species from investing limited resources in defense to instead use those resources for growth, selecting for individuals with reduced defense, enhanced growth, and, consequently, increased competitive ability. We took a multispecies approach, including ancestral and non-native populations of seven weeds, as well as seven coexisting local weeds, to explore all three predictions (i.e., lower defense, greater growth, and better ability to compete in non-native than ancestral populations), the generality as an invasion mechanism for a given system, and community-level consequences of EICA. We assessed plant defenses by conducting herbivory trials with a generalist herbivore. Therefore, finding that non-native populations are better defended than ancestral populations would lend support to the shifting defense (SD) hypothesis, an extension of EICA that incorporates the observation that introduced species escape specialists, but encounter generalists. We also manipulated water additions to evaluate how resource availability influences competition in the context of EICA and plant plasticity in our semi-arid system. We found that non-native populations of one study species, Centaurea solstitialis, were better defended, grew faster, and exerted stronger suppression on locals than ancestral populations, offering support to EICA through the SD hypothesis. The other species also displayed variation in trait attributes between ancestral and non-native populations, but they did not fully comply with the three predictions of EICA. Notably, differences between those populations generally favored the non-natives. Moreover, non-native populations were, overall, superior at suppressing locals relative to ancestral populations under low water conditions. There were no differences in plasticity among all three groups. These results suggest that evolutionary change between ancestral and non-native populations is widespread and could have facilitated invasion in our system. Additionally, although trading growth for shifted defense does not seem to be the main operational path for evolutionary change, it may explain the dominance of some introduced species in ruderal communities. Because introduced species dominate communities in disturbed environments around the world, our results are likely generalizable to other systems.

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TL;DR: In this article , the authors used an extensive GPS-tracking data set of a long-lived lizard, the sleepy lizard (Tiliqua rugosa), which included repeated observations of multiple individuals across years.
Abstract: Home ranges (HRs), the regions within which animals interact with their environment, constitute a fundamental aspect of their ecology. HR sizes and locations commonly reflect costs and benefits associated with diverse social, biotic, and abiotic factors. Less is known, however, about how these factors affect intraspecific variation in HR size or fidelity (the individual's tendency to maintain the same HR location over time) or whether variation in these features emerge from consistent differences among individuals or among the sites they occupy. To address this knowledge gap, we used an extensive GPS-tracking data set of a long-lived lizard, the sleepy lizard (Tiliqua rugosa), which included repeated observations of multiple individuals across years. We tested how three categories of predictors—(1) lizard characteristics (sex, aggressiveness, and parasitic tick counts), (2) environmental characteristics (precipitation, food, and refuge quality), and (3) social conditions (conspecific overlap and number of neighbors)—affected HR size and fidelity. We found that individuals differed consistently in the size and fidelity of annual HRs (with a repeatability of 0.58 and 0.33, respectively), and that all three categories of predictors affected both HR size and fidelity. For example, HRs were smaller in areas with more food, and males had larger HRs than females. In addition, more aggressive lizards tended to have larger HRs. Conspecific overlap and number of individuals that a lizard interacted with (social network degree) had an interactive effect on HR size where individuals whose HRs overlapped more with neighbors had larger HRs, and this effect was particularly strong for individuals that interacted with more neighbors. HR fidelity declined over time (HR locations drifted from year to year), but individuals differed consistently in this rate of drift. The fact that HR size was consistent despite drifting locations suggests that lizard HRs reflect individual traits (e.g., habitat choice criteria that differ among individuals), rather than simple heterogeneity among sites. Overall, these findings demonstrate (1) both strong, long-term, within-individual consistency and between-individual differences in space use and (2) combined effects of individual traits, social conditions, and environmental characteristics on animal HRs, with implications for diverse ecological processes.

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TL;DR: In this paper , a computationally based partitioning method is presented to quantify the contributions to coexistence from different mechanisms, such as demographic stochasticity, variable environment, and variable competition.
Abstract: The usual theoretical condition for coexistence is that each species in a community can increase when it is rare (mutual invasibility). Traditional coexistence theory implicitly assumes that the invading species is common enough that we can ignore demographic stochasticity but rare enough that it does not compete with itself, even after it has reached a stationary spatial distribution. However, short-distance dispersal of discrete individuals leads to locally dense population clusters, and existing theory breaks down. We have an intuition that when we account for invader–invader competition, shorter-range dispersal should reduce the invader's ability to escape competition, but exactly how does this translate into lower population growth? And how will invader discreteness affect outcomes? We need a way of partitioning the contributions to coexistence, but current modern coexistence theory (MCT) does not apply under these conditions. Here we present a computationally based partitioning method to quantify the contributions to coexistence from different mechanisms, as in MCT. We also build up an intuition for how invader clumping and discreteness will affect these contributions by analyzing a case study, a lattice-based spatial lottery model. We first consider fluctuation-dependent coexistence, partitioning the contributions of variable environment, variable competition, demographic stochasticity, and their correlations and interactions. Our second example examines fluctuation-independent coexistence maintained by a fecundity–survival trade-off, and partitions the contributions to coexistence from interspecific differences in fecundity, in mortality, and in dispersal. We find that demographic stochasticity harms an invader, but only slightly. Localized invader dispersal, on the other hand, can have a strong effect. When invaders are more clumped, they compete with each other more intensely when rare, so they too become limited by environment-competition covariance. More invader clumping also means that variation in competition changes from helping the invader to harming it. More broadly, invader clumping is likely to weaken any coexistence mechanism that relies on the invader escaping competition from the resident, because invader clumping means that the resident is no longer the only source of competition.


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TL;DR: In this article , the authors examined a mature temperate forest to assess both direct and indirect climate effects at multiple scales: individual species, interspecies relationships, and community stability mechanisms.
Abstract: Plant competition may intensify with climate warming, but whether this will occur equally for conspecific and heterospecific competition remains unknown. Competitive shifts have the potential to instigate community change because the relative strengths of conspecific and heterospecific negative density dependence mediate the stabilizing mechanisms underpinning species coexistence. We examined a mature temperate forest to assess both direct and indirect climate effects at multiple scales: individual species, interspecies relationships, and community stability mechanisms. Our coupled approach 1) quantified tree mortality risk dependence on the interactive effects of competition, climatic water deficit, snowpack, and soil moisture for 28,913 trees over eight years (3,149 mortalities), then 2) used a climate-projection ensemble to forecast changes in conspecific and heterospecific competition from 2020 to 2100. We predict that projected climate warming will destabilize the foundational forest community by increasing the strength of heterospecific competition at a greater rate and to a greater degree than conspecific competition for four of five abundant tree species, particularly on dry microsites. Modeling showed that these findings were most pronounced after the year 2038, at which point snowpacks were projected to be too small to ameliorate the effects of drought on competitive interactions. Our finding that heterospecific competition is more sensitive than conspecific competition to climate warming may indicate impending loss of ecosystem functioning. We join the growing body of work showing a predominance of indirect drought effects, yet coupled climate models still fail to consider how changing community dynamics may impact forest cover and, in turn, disrupt forest–climate carbon feedbacks. Ecosystems sharing characteristics with our example forest – those with low species richness and thus a limited biodiversity insurance effect – may be similarly vulnerable to climate-mediated destabilization. In such communities, increased heterospecific competition among even a small number of species can more easily destabilize communities without recourse from redundant species. This study of an overlooked but vital mechanism of community change can be adapted by researchers in a range of ecosystems to improve understanding of climate change consequences. This article is protected by copyright. All rights reserved.

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TL;DR: In this paper , the authors examined evidence and mechanisms of migration for four hover fly species common throughout eastern North America using stable hydrogen isotope (δ2H) measurements of chitinous tissue, morphological assessments, abundance estimations, and cold tolerance assays.
Abstract: Long-distance insect migration is poorly understood despite its tremendous ecological and economic importance. As a group, Nearctic hover flies (Diptera: Syrphidae: Syrphinae), which are crucial pollinators as adults and biological control agents as larvae, are almost entirely unrecognized as migratory despite examples of highly migratory behavior among several Palearctic species. Here, we examined evidence and mechanisms of migration for four hover fly species (Allograpta obliqua, Eupeodes americanus, Syrphus rectus, and Syrphus ribesii) common throughout eastern North America using stable hydrogen isotope (δ2H) measurements of chitinous tissue, morphological assessments, abundance estimations, and cold-tolerance assays. Although further studies are needed, nonlocal isotopic values obtained from hover fly specimens collected in central Illinois support the existence of long-distance fall migratory behavior in Eu. americanus, and to a lesser extent S. ribesii and S. rectus. Elevated abundance of Eu. americanus during the expected autumn migratory period further supports the existence of such behavior. Moreover, high phenotypic plasticity of morphology associated with dispersal coupled with significant differences between local and nonlocal specimens suggest that Eu. americanus exhibits a unique suite of morphological traits that decrease costs associated with long-distance flight. Finally, compared with the ostensibly nonmigratory A. obliqua, Eu. americanus was less cold tolerant, a factor that may be associated with migratory behavior. Collectively, our findings imply that fall migration occurs in Nearctic hover flies, but we consider the methodological limitations of our study in addition to potential ecological and economic consequences of these novel findings.

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TL;DR: In this paper , the authors developed mechanistic and hybrid models that explicitly capture range-limiting processes, and explored how incorporating mechanisms altered the projected impacts of climate change for an agricultural pest, the South American locust.
Abstract: Global climate change will probably exacerbate crop losses from insect pests, reducing agricultural production, and threatening food security. To predict where crop losses will occur, scientists have mainly used correlative models of species' distributions, but such models are unreliable when extrapolated to future environments. To minimize extrapolation, we developed mechanistic and hybrid models that explicitly capture range-limiting processes, and we explored how incorporating mechanisms altered the projected impacts of climate change for an agricultural pest, the South American locust (Schistocerca cancellata). Because locusts are generalist herbivores surrounded by food, their population growth may be limited by thermal effects on digestion more than food availability. To incorporate this mechanism into a distribution model, we measured the thermal effects on the consumption and defecation of field-captured locusts and used these data to model energy gain in current and future climates. We then created hybrid models by using outputs of the mechanistic model as predictor variables in correlative models, estimating the potential distribution of gregarious outbreaking locusts based on multiple predictor sets, modeling algorithms, and climate scenarios. Based on the mechanistic model, locusts can assimilate relatively high amounts of energy throughout temperate and tropical South America; however, correlative and hybrid modeling revealed that most tropical areas are unsuitable for locusts. When estimating current distributions, the top-ranked model was always the one fit with mechanistic predictors (i.e., the hybrid model). When projected to future climates, top-ranked hybrid models projected range expansions that were 23%–30% points smaller than those projected by correlative models. Therefore, a combination of the correlative and mechanistic approaches bracketed the potential outcomes of climate change and enhanced confidence where model projections agreed. Because all models projected a poleward range expansion under climate change, agriculturists should consider enhanced monitoring and the management of locusts near the southern margin of the range.

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TL;DR: In this article , the authors investigated the drivers of spider community assembly in temperate forests by analyzing two independent data sets covering gradients in elevation and forest succession, and concluded that spider assemblages within a region are mainly determined by local environmental conditions, while resource availability, biotic interactions and dispersal play a minor role.
Abstract: Understanding species richness variation among local communities is one of the central topics in ecology, but the complex interplay of regional processes, environmental filtering, and local processes hampers generalization on the importance of different processes. Here, we aim to unravel drivers of spider community assembly in temperate forests by analyzing two independent data sets covering gradients in elevation and forest succession. We test the following four hypotheses: (H1) spider assemblages within a region are limited by dispersal, (H2) local environment has a dominant influence on species composition and (H3) resources, and (H4) biotic interactions both affect species richness patterns. In a comprehensive approach, we studied species richness, abundance, taxonomic composition, and trait-phylogenetic dissimilarity of assemblages. The decrease in taxonomic similarity with increasing spatial distance was very weak, failing to support H1. Functional clustering of species in general and with canopy openness strongly supported H2. Moreover, this hypothesis was supported by a positive correlation between environmental and taxonomic similarity and by an increase in abundance with canopy openness. Resource determination of species richness (H3) could be confirmed only by the decrease of species richness with canopy cover. Finally, decreasing species richness with functional clustering indicating effects of biotic interactions (H4) could only be found in one analysis and only in one data set. In conclusion, our findings indicate that spider assemblages within a region are mainly determined by local environmental conditions, while resource availability, biotic interactions and dispersal play a minor role. Our approach shows that both the analysis of different aspects of species diversity and replication of community studies are necessary to identify the complex interplay of processes forming local assemblages.

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TL;DR: In this paper , the role of interference and exploitation competition from bears on wolf predatory behavior was investigated in two long-term research projects in Scandinavia (Europe) and Yellowstone National Park (North America).
Abstract: Competition between apex predators can alter the strength of top-down forcing, yet we know little about the behavioral mechanisms that drive competition in multipredator ecosystems. Interactions between predators can be synergistic (facilitative) or antagonistic (inhibitive), both of which are widespread in nature, vary in strength between species and across space and time, and affect predation patterns and predator–prey dynamics. Recent research has suggested that gray wolf (Canis lupus) kill rates decrease where they are sympatric with brown bears (Ursus arctos), however, the mechanisms behind this pattern remain unknown. We used data from two long-term research projects in Scandinavia (Europe) and Yellowstone National Park (North America) to test the role of interference and exploitation competition from bears on wolf predatory behavior, where altered wolf handling and search time of prey in the presence of bears are indicative of interference and exploitation competition, respectively. Our results suggest the mechanisms driving competition between bears and wolves were dependent on the season and study system. During spring in Scandinavia, interference competition was the primary mechanism driving decreased kill rates for wolves sympatric with bears; handling time increased, but search time did not. In summer, however, when both bear and wolf predation focused on neonate moose, the behavioral mechanism switched to exploitation competition; search time increased, but handling time did not. Alternartively, interference competition did affect wolf predation dynamics in Yellowstone during summer, where wolves prey more evenly on neonate and adult ungulates. Here, bear presence at a carcass increased the amount of time wolves spent at carcasses of all sizes and wolf handling time for small prey, but decreased handling time for the largest prey. Wolves facilitate scavenging opportunities for bears, however, bears alter wolf predatory behavior via multiple pathways and are primarily antagonistic to wolves. Our study helps to clarify the behavioral mechanisms driving competition between apex predators, illustrating how interspecific interactions can manifest into population-level predation patterns.