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Open AccessJournal ArticleDOI

A Computationally Efficient Approach to Segmentation of the Aorta and Coronary Arteries Using Deep Learning

TLDR
In this paper, a fully automatic two-dimensional Unet model is proposed to segment the aorta and coronary arteries on CTCA images, which achieves 91.20% and 88.80% dice similarity coefficient accuracy on regions of interest 1 and 2 respectively.
Abstract
Early detection and diagnosis of coronary artery disease could reduce the risk of developing a heart attack. The coronary arteries are optimally visualised using computed tomography coronary angiography (CTCA) imaging. These images are reviewed by specialist radiologists who evaluate the coronary arteries for potential narrowing. A lack of radiologists in the UK is a constraint to timely diagnosis of coronary artery disease, particularly in the acute accident and emergency department setting. The development of automated methods by which coronary artery narrowing can be identified rapidly and accurately are therefore timely. Such complex computer based tools also need to be sufficiently computationally efficient that they can run on servers typically found in hospital settings, where graphical processing units for example are unavailable. We propose a fully automatic two-dimensional Unet model to segment the aorta and coronary arteries on CTCA images. Two models are trained to segment two regions of interest, (1) the aorta and the coronary arteries or (2) the coronary arteries alone. Our method achieves 91.20% and 88.80% dice similarity coefficient accuracy on regions of interest 1 and 2 respectively. Compared with a semi-automatic segmentation method, our model performs better when segmenting the coronary arteries alone. The performance of the proposed method is comparable to existing published two-dimensional or three-dimensional deep learning models. Importantly, the algorithmic and graphical processing unit memory efficiencies are maintained such that the model can be deployed without requiring graphical processing units, and therefore can be used in a hospital setting.

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Citations
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Journal ArticleDOI

Detecting Coronary Artery Disease from Computed Tomography Images Using a Deep Learning Technique

TL;DR: The present work is unique in applying a feature extraction model with CNN for CAD detection and the performance of the proposed feature extraction and CNN model is superior to the existing models.
Journal ArticleDOI

Review of Semantic Segmentation of Medical Images Using Modified Architectures of UNET

TL;DR: In this article , the modified and improved models of UNET suitable for increasing segmentation accuracy were introduced for MRI image segmentation, which is a well-known semantic segmentation technique in medical image analysis.
Journal ArticleDOI

Optimization of FFR prediction algorithm for gray zone by hemodynamic features with synthetic model and biometric data

TL;DR: In this paper , an artificial intelligence-based coronary vascular diagnosis system focused on performance in the gray zone, from CT image extraction to FFR estimation, was developed, which consisted of two steps: the first algorithm calculates flow features from geometrical features, and the second algorithm estimates the FFR value from flow features and patient biometric features.
Journal ArticleDOI

UNet Deep Learning Architecture for Segmentation of Vascular and Non-Vascular Images: A Microscopic Look at UNet Components Buffered With Pruning, Explainable Artificial Intelligence, and Bias

TL;DR: In this paper , the authors presented a review of UNet-based segmentation methods by complexity, complexity, pruning, and AI bias, addressing UNet in vascular vs. non-vascular framework, the key to segmentation challenge vs. UNet based architecture, and interfacing the three facets of AI, the pruning and explainable AI (XAI), and the AI bias.
Journal ArticleDOI

UNet Deep Learning Architecture for Segmentation of Vascular and Non-Vascular Images: A Microscopic Look at UNet Components Buffered With Pruning, Explainable Artificial Intelligence, and Bias

- 01 Jan 2023 - 
TL;DR: In this article , the authors presented a review of UNet-based segmentation methods by complexity, complexity, pruning, and AI bias, addressing UNet in vascular vs. non-vascular framework, the key to segmentation challenge vs. UNet based architecture, and interfacing the three facets of AI, the pruning and explainable AI (XAI), and the AI bias.
References
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Book ChapterDOI

U-Net: Convolutional Networks for Biomedical Image Segmentation

TL;DR: Neber et al. as discussed by the authors proposed a network and training strategy that relies on the strong use of data augmentation to use the available annotated samples more efficiently, which can be trained end-to-end from very few images and outperforms the prior best method (a sliding-window convolutional network) on the ISBI challenge for segmentation of neuronal structures in electron microscopic stacks.
Journal ArticleDOI

NIH Image to ImageJ: 25 years of image analysis

TL;DR: The origins, challenges and solutions of NIH Image and ImageJ software are discussed, and how their history can serve to advise and inform other software projects.
Journal ArticleDOI

A survey on deep learning in medical image analysis

TL;DR: This paper reviews the major deep learning concepts pertinent to medical image analysis and summarizes over 300 contributions to the field, most of which appeared in the last year, to survey the use of deep learning for image classification, object detection, segmentation, registration, and other tasks.
Journal ArticleDOI

3D Slicer as an image computing platform for the Quantitative Imaging Network.

TL;DR: An overview of 3D Slicer is presented as a platform for prototyping, development and evaluation of image analysis tools for clinical research applications and the utility of the platform in the scope of QIN is illustrated.
Journal ArticleDOI

UNet++: Redesigning Skip Connections to Exploit Multiscale Features in Image Segmentation

TL;DR: UNet++ as mentioned in this paper proposes an efficient ensemble of U-Nets of varying depths, which partially share an encoder and co-learn simultaneously using deep supervision, leading to a highly flexible feature fusion scheme.
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