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A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: the RESP model

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TLDR
In this paper, the authors present an approach to generate electrostatic potential (ESP) derived charges for molecules, which optimally reproduce the intermolecular interaction properties of molecules with a simple two-body additive potential, provided that a suitably accurate level of quantum mechanical calculation is used to derive the ESP around the molecule.
Abstract
We present a new approach to generating electrostatic potential (ESP) derived charges for molecules. The major strength of electrostatic potential derived charges is that they optimally reproduce the intermolecular interaction properties of molecules with a simple two-body additive potential, provided, of course, that a suitably accurate level of quantum mechanical calculation is used to derive the ESP around the molecule. Previously, the major weaknesses of these charges have been that they were not easily transferable between common functional groups in related molecules, they have often been conformationally dependent, and the large charges that frequently occur can be problematic for simulating intramolecular interactions

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TL;DR: In this paper, it has been discovered that certain natural mRNAs serve as metabolite-sensitive genetic switches wherein the RNA directly binds a small organic molecule, which causes a change in gene expression by a variety of different mechanisms.
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Effect of flavonols on wine astringency and their interaction with human saliva.

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Substrate discrimination by formamidopyrimidine-DNA glycosylase: a mutational analysis.

TL;DR: Results suggest that His-89 and Arg-109 form part of a reading head, a structural feature used by the enzyme to scan DNA for damage, which helps determine the specificity of Fpg in recognizing the oxidatively damaged base.
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The Iron−Sulfur Bond in Cytochrome c

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References
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Journal ArticleDOI

The MIDAS display system

TL;DR: At the core of MIDAS is a hierarchical database system, designed specifically for macromolecules, that is both compact in its storage requirements and fast in its data access.
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