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Open AccessJournal ArticleDOI

Arabidopsis transcriptional repressor VAL1 triggers Polycomb silencing at FLC during vernalization

TLDR
A single point mutation is identified at an intragenic nucleation site within FLC that prevents a cold-dependent epigenetic switch from taking place in plant homeodomain–Polycomb repressive complex 2 (PHD-PRC2) and indicates a role for the transcriptional repressor VAL1 in the silencing mechanism.
Abstract
The determinants that specify the genomic targets of Polycomb silencing complexes are still unclear. Polycomb silencing of Arabidopsis FLOWERING LOCUS C ( FLC ) accelerates flowering and involves a cold-dependent epigenetic switch. Here we identify a single point mutation at an intragenic nucleation site within FLC that prevents this epigenetic switch from taking place. The mutation blocks nucleation of plant homeodomain–Polycomb repressive complex 2 (PHD-PRC2) and indicates a role for the transcriptional repressor VAL1 in the silencing mechanism. VAL1 localizes to the nucleation region in vivo, promoting histone deacetylation and FLC transcriptional silencing, and interacts with components of the conserved apoptosis- and splicing-associated protein (ASAP) complex. Sequence-specific targeting of transcriptional repressors thus recruits the machinery for PHD-PRC2 nucleation and epigenetic silencing.

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Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants.

TL;DR: In this review, both the involvement of chromatin in stress responses and the current evidence on somatic, intergenerational, and transgenerational stress memory are discussed.
Journal ArticleDOI

Molecular Regulation of Plant Responses to Environmental Temperatures

TL;DR: Recent progress is discussed in exploring thermomorphogenesis, vernalization, and the mechanisms underlying plant tolerance to extreme temperatures, which are crucial for understanding the interactions between plants and temperature.
Journal ArticleDOI

The FLC Locus: A Platform for Discoveries in Epigenetics and Adaptation

TL;DR: Molecular analysis of vernalization pathways has revealed important insight into antisense-mediated chromatin silencing mechanisms that regulate Arabidopsis thaliana FLOWERING LOCUS C, and such insight has enabled molecular dissection of the diversity in vernALization across natural populations of A.Thaliana.
Journal ArticleDOI

H3K27 methylation: a promiscuous repressive chromatin mark

TL;DR: Emerging information supports the idea that the chromatin context-including histone modifications, DNA methylation, transcription, chromatin structure and organization within the nucleus-informs PRC2 target selection.
References
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Journal ArticleDOI

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.

TL;DR: MaxQuant, an integrated suite of algorithms specifically developed for high-resolution, quantitative MS data, detects peaks, isotope clusters and stable amino acid isotope–labeled (SILAC) peptide pairs as three-dimensional objects in m/z, elution time and signal intensity space and achieves mass accuracy in the p.p.b. range.
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In-gel digestion for mass spectrometric characterization of proteins and proteomes

TL;DR: This protocol is for the in-gel digestion of both silver and Coomassie-stained protein spots or bands and can be followed by MALDI-MS or LC-MS/MS analysis to identify proteins at sensitivities better than a few femtomoles of protein starting material.
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FLOWERING LOCUS C Encodes a Novel MADS Domain Protein That Acts as a Repressor of Flowering

TL;DR: This study reports that flc null mutations result in early flowering, demonstrating that the role of active FLC alleles is to repress flowering, and proposes that the level of FLC activity acts through a rheostat-like mechanism to control flowering time in Arabidopsis and that modulation of F LC expression is a component of the vernalization response.
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Chromatin compaction by a polycomb group protein complex.

TL;DR: It is demonstrated by electron microscopy that core components of Polycomb Repressive Complex 1 induce compaction of defined nucleosomal arrays, suggesting this mechanism of chromatin compaction might be central to stable gene silencing by the Polycomb group.
Journal ArticleDOI

Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3

TL;DR: This work identifies a gene with a function in the measurement of the duration of cold exposure and in the establishment of the vernalized state of Arabidopsis thaliana and shows that this silencing involves changes in the modification of histones in FLC chromatin.
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