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Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health

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TLDR
This pathogen profile synthesizes the current understanding of B. dothidea pertaining to its distribution, host associations and role as a pathogen in managed and natural woody environments, as well as elucidating previously unknown aspects of the species, including mating and host infection strategies.
Abstract
The National Research Foundation (NRF) of South Africa and members of the Tree Protection Co-operative Programme (TPCP).

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Identification the Pathogens Causing Rot Disease in Pomegranate (Punica granatum L.) in China and the Antifungal Activity of Aqueous Garlic Extract

TL;DR: The results showed that the pathogens causing soft rot and dry rot in ‘Xinjiang Big Seed’ pomegranate were most probably Aspergillus niger and Botryosphaeria dothidea, respectively.
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Antagonistic activity and biocontrol effects of Streptomyces sp. CX3 cell-free supernatant against blueberry canker caused by Botryosphaeria dothidea

TL;DR: In this article , the modes of antagonism by cell-free supernatant (CFS) of Streptomyces sp. CX3 against B. dothidea was investigated and the biocontrol efficacy of CFS under field conditions was also evaluated.
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Approaches to Forecasting Damage by Invasive Forest Insects and Pathogens: A Cross-Assessment

TL;DR: In this paper , the authors evaluate the implicit assumptions, optimal usages, and advantages and limitations of each approach and propose methods for integrating multiple approaches to improve their forecasting ability and prevent losses from invasive pests.
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Occurrence and Morpho-Molecular Identification of Botryosphaeriales Species from Guizhou Province, China.

TL;DR: In this paper, 60 saprobic isolates were obtained from decaying woody hosts in southwestern China, and available DNA sequence data was used to infer phylogenetic analyses based on the internal transcribed spacer (ITS), large subunit rRNA gene (LSU), and translation elongation factor 1-α (tef) loci.
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The Cutinase Bdo_10846 Play an Important Role in the Virulence of Botryosphaeria dothidea and in Inducing the Wart Symptom on Apple Plant

TL;DR: In this paper, the authors investigated the mechanism of warts formation by observing the transection ultrastructure of the inoculated cortical tissues at various time points of the infection process and detecting the expression of genes related to the pathogen pathogenicity and plant defense response.
References
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Journal Article

R: A language and environment for statistical computing.

R Core Team
- 01 Jan 2014 - 
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

TL;DR: This version of MAFFT has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update.
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

TL;DR: This work presents some of the most notable new features and extensions of RAxML, such as a substantial extension of substitution models and supported data types, the introduction of SSE3, AVX and AVX2 vector intrinsics, techniques for reducing the memory requirements of the code and a plethora of operations for conducting post-analyses on sets of trees.
Journal ArticleDOI

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

TL;DR: A simplified scoring system is proposed that performs well for reducing CPU time and increasing the accuracy of alignments even for sequences having large insertions or extensions as well as distantly related sequences of similar length.
Journal ArticleDOI

The endophytic continuum.

TL;DR: It is hypothesized that the endophytes, in contrast to known pathogens, generally have far greater phenotypic plasticity and thus more options than pathogens: infection, local but also extensive colonisation, latency, virulence, pathogenity and (or) saprophytism.
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