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Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health

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TLDR
This pathogen profile synthesizes the current understanding of B. dothidea pertaining to its distribution, host associations and role as a pathogen in managed and natural woody environments, as well as elucidating previously unknown aspects of the species, including mating and host infection strategies.
Abstract
The National Research Foundation (NRF) of South Africa and members of the Tree Protection Co-operative Programme (TPCP).

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MdHIR4 transcription and translation levels associated with disease in apple are regulated by MdWRKY31

TL;DR: It is described that the regulation of MdWRKY31 on MdHIR4 in transcription and translation levels associated with disease in apple reveals that WRKY regulated plant resistance to B. dothidea through the SA signaling pathway by interacting with MdHir4.
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Botryosphaeriales associated with stem blight and dieback of blueberry ( Vaccinium spp.) in New South Wales and Western Australia

TL;DR: This study provides the first survey of Botryosphaeriales causing blueberry stem blight and dieback in Australia, and is a valuable resource for plant pathologists and growers trying to manage the disease.
Journal ArticleDOI

Phylogenomics of Plant-Associated Botryosphaeriaceae Species.

TL;DR: In this paper, a comparative phylogenomic investigation of the evolution of possible virulence factors from diverse, cosmopolitan members of the Botryosphaeriaceae is presented. But the results revealed significant variation in virulence in terms of the length of the internal wood lesions caused by these seventeen species.
Posted ContentDOI

Phylogenomics of plant-associated Botryosphaeriaceae species

TL;DR: Overall, species with expansions of gene families, such as secreted CAZymes, secondary metabolism, and transporters, were the most virulent (i.e., were associated with the largest lesions), based on pathogenicity tests and published reports.
Journal ArticleDOI

Assessment of Conjugate Complexes of Chitosan and Urtica dioica or Equisetum arvense Extracts for the Control of Grapevine Trunk Pathogens

TL;DR: In this paper, the efficacy of three basic substances that comply with European Regulation (EC) No 1107/2009, namely chitosan, horsetail (Equisetum arvense L.) and nettle (Urtica dioica L.), for the control of grapevine trunk diseases (GTDs) in organic farming was analyzed.
References
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Journal Article

R: A language and environment for statistical computing.

R Core Team
- 01 Jan 2014 - 
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
Journal ArticleDOI

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

TL;DR: This version of MAFFT has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update.
Journal ArticleDOI

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

TL;DR: This work presents some of the most notable new features and extensions of RAxML, such as a substantial extension of substitution models and supported data types, the introduction of SSE3, AVX and AVX2 vector intrinsics, techniques for reducing the memory requirements of the code and a plethora of operations for conducting post-analyses on sets of trees.
Journal ArticleDOI

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

TL;DR: A simplified scoring system is proposed that performs well for reducing CPU time and increasing the accuracy of alignments even for sequences having large insertions or extensions as well as distantly related sequences of similar length.
Journal ArticleDOI

The endophytic continuum.

TL;DR: It is hypothesized that the endophytes, in contrast to known pathogens, generally have far greater phenotypic plasticity and thus more options than pathogens: infection, local but also extensive colonisation, latency, virulence, pathogenity and (or) saprophytism.
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