Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework
Bernard Slippers,Emilie Boissin,Emilie Boissin,Alan Jl L. Phillips,Johannes Z. Groenewald,Lorenzo Lombard,Michael J. Wingfield,Alisa Postma,Treena I. Burgess,Pedro W. Crous +9 more
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TLDR
Molecular clock dating on radiations within the Botryosphaeriales suggests that the order originated in the Cretaceous period around 103 (45-188) mya, with most of the diversification in the Tertiary period.About:
This article is published in Studies in Mycology.The article was published on 2013-09-30 and is currently open access. It has received 202 citations till now. The article focuses on the topics: Botryosphaeriaceae & Aplosporella.read more
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Journal ArticleDOI
The Botryosphaeriaceae: genera and species known from culture
Alan J. L. Phillips,Artur Alves,Jafar Abdollahzadeh,Bernard Slippers,Michael J. Wingfield,Johannes Z. Groenewald,Pedro W. Crous,Pedro W. Crous +7 more
TL;DR: It seems likely that all of the older taxa linked to the Botryosphaeriaceae, and for which cultures or DNA sequence data are not available, cannot belinked to the species in this family that are known from culture, and will have to be disregarded for future use unless they are epitypified.
Journal ArticleDOI
Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
Guo Jie Li,Kevin D. Hyde,Kevin D. Hyde,Kevin D. Hyde,Rui-Lin Zhao,Sinang Hongsanan,Sinang Hongsanan,Faten A. Abdel-Aziz,Mohamed A. Abdel-Wahab,Mohamed A. Abdel-Wahab,Pablo Alvarado,Genivaldo Alves-Silva,Joseph F. Ammirati,Hiran A. Ariyawansa,Abhishek Baghela,Ali H. Bahkali,Michael Beug,D. Jayarama Bhat,Dimitar Bojantchev,Thitiya Boonpratuang,Timur S. Bulgakov,Erio Camporesi,Marcela C. Boro,Oldriska Ceska,Dyutiparna Chakraborty,Jia-Jia Chen,K. W. Thilini Chethana,Putarak Chomnunti,Giovanni Consiglio,Bao-Kai Cui,Dong-Qin Dai,Yu Cheng Dai,Dinushani A. Daranagama,Dinushani A. Daranagama,Kanad Das,Monika C. Dayarathne,Monika C. Dayarathne,Eske De Crop,Rafael J. V. De Oliveira,Carlos Alberto Fragoso de Souza,José I. de Souza,Bryn T. M. Dentinger,Bryn T. M. Dentinger,Asha J. Dissanayake,Mingkwan Doilom,Mingkwan Doilom,E. Ricardo Drechsler-Santos,Masoomeh Ghobad-Nejhad,Sean P. Gilmore,Aristóteles Góes-Neto,Michał Gorczak,Charles H. Haitjema,Kalani Kanchana Hapuarachchi,Kalani Kanchana Hapuarachchi,Akira Hashimoto,Akira Hashimoto,Mao Qiang He,Mao Qiang He,John K. Henske,Kazuyuki Hirayama,María Josefina Iribarren,Subashini C. Jayasiri,Ruvishika S. Jayawardena,Sun Jeong Jeon,Gustavo Henrique Jerônimo,Ana L. Jesus,E. B. Gareth Jones,Ji Chuan Kang,Samantha C. Karunarathna,Samantha C. Karunarathna,Paul M. Kirk,Sirinapa Konta,Sirinapa Konta,Eric Kuhnert,Ewald Langer,Haeng Sub Lee,Hyang Burm Lee,Wen-Jing Li,Wen-Jing Li,Xinghong Li,Kare Liimatainen,Diogo Xavier Lima,Chuan Gen Lin,Chuan Gen Lin,Jian-Kui Liu,Xings Zhong Liu,Zuo Yi Liu,J. Jennifer Luangsa-ard,Robert Lücking,H. Thorsten Lumbsch,Saisamorn Lumyong,Eduardo M. Leaño,Agostina V. Marano,Misato Matsumura,Misato Matsumura,Eric H. C. McKenzie,Suchada Mongkolsamrit,Peter E. Mortimer,Thi Thuong Thuong Nguyen,Tuula Niskanen,Chada Norphanphoun,Chada Norphanphoun,Michelle A. O’Malley,Sittiporn Parnmen,Julia Pawłowska,Rekhani H. Perera,Rekhani H. Perera,Rungtiwa Phookamsak,Rungtiwa Phookamsak,Chayanard Phukhamsakda,Chayanard Phukhamsakda,Carmen L. A. Pires-Zottarelli,Olivier Raspé,Mateus Arduvino Reck,Sarah C. O. Rocha,André L. C. M. A. de Santiago,Indunil C. Senanayake,Ledo Setti,Qiu Ju Shang,Sanjay K. Singh,Esteban Benjamin Sir,Kevin V. Solomon,Jie Song,Prasert Srikitikulchai,Marc Stadler,Satinee Suetrong,Hayato Takahashi,Takumasa Takahashi,Kazuaki Tanaka,Li Ping Tang,Kasun M. Thambugala,Donnaya Thanakitpipattana,Michael K. Theodorou,Benjarong Thongbai,Tuksaporn Thummarukcharoen,Qing Tian,Qing Tian,Saowaluck Tibpromma,Saowaluck Tibpromma,Annemieke Verbeken,Alfredo Vizzini,Josef Vlasák,Kerstin Voigt,Dhanushka N. Wanasinghe,Dhanushka N. Wanasinghe,Yong Wang,Gothamie Weerakoon,Hua An Wen,Ting-Chi Wen,Nalin N. Wijayawardene,Sarunyou Wongkanoun,Marta Wrzosek,Yuan Pin Xiao,Yuan Pin Xiao,Jianchu Xu,Ji Ye Yan,Jing Yang,Shu Da Yang,Yu Hu,Jin-Feng Zhang,Jie Zhao,Li-Wei Zhou,Derek Peršoh,Alan J. L. Phillips,Sajeewa S. N. Maharachchikumbura +164 more
TL;DR: This paper is a compilation of notes on 142 fungal taxa, including five new families, 20 new genera, and 100 new species, representing a wide taxonomic and geographic range.
Journal ArticleDOI
Outline of Fungi and fungus-like taxa
Nalin N. Wijayawardene,Kevin D. Hyde,L. K. T. Al-Ani,L. K. T. Al-Ani,Leho Tedersoo,Danny Haelewaters,Kunhiraman C. Rajeshkumar,R. L Zhao,André Aptroot,Dmitry V. Leontyev,R. K. Saxena,Yuri Tokarev,Dong-Qin Dai,Peter M. Letcher,Steven L. Stephenson,Damien Ertz,H. T. Lumbsch,Martin Kukwa,I. V. Issi,Hugo Madrid,Alan J. L. Phillips,Laura Selbmann,Walter P. Pfliegler,Enikő Horváth,K. Bensch,Paul M. Kirk,K. Kolaríková,Huzefa A. Raja,Renate Radek,Viktor Papp,V. Dima,J. Ma,Elaine Malosso,Susumu Takamatsu,Susumu Takamatsu,Gerhard Rambold,P. B. Gannibal,Dagmar Triebel,Ajay Kumar Gautam,Shubhi Avasthi,Satinee Suetrong,Einar Timdal,Sally C. Fryar,Gregorio Delgado,Martina Réblová,Mingkwan Doilom,Somayeh Dolatabadi,Julia Pawłowska,Richard A. Humber,Rampai Kodsueb,Iván Sánchez-Castro,B. T. Goto,D. K. A. Silva,F. A. de Souza,Fritz Oehl,G. A. da Silva,Janusz Błaszkowski,Khadija Jobim,Leonor Costa Maia,F. R. Barbosa,P. O. Fiuza,Pradeep K. Divakar,Belle Damodara Shenoy,Rafael F. Castañeda-Ruiz,Sayanh Somrithipol,A. A. Lateef,Samantha C. Karunarathna,Samantha C. Karunarathna,Samantha C. Karunarathna,Saowaluck Tibpromma,Saowaluck Tibpromma,Saowaluck Tibpromma,Peter E. Mortimer,Dhanushka N. Wanasinghe,Dhanushka N. Wanasinghe,Dhanushka N. Wanasinghe,Rungtiwa Phookamsak,J. Xu,Y. Wang,F. Tian,P. Alvarado,D. W. Li,I. Kusan,Neven Matočec,Armin Mešić,Zdenko Tkalčec,Sajeewa S. N. Maharachchikumbura,Moslem Papizadeh,Gabriela Heredia,Felipe Wartchow,Mounes Bakhshi,Eric W.A. Boehm,Noha H. Youssef,V. P. Hustad,James D. Lawrey,André Luiz Cabral Monteiro de Azevedo Santiago,Jadson D. P. Bezerra,Cristina Maria de Souza-Motta,A. L. Firmino,Qing Tian,Jos Houbraken,Sinang Hongsanan,Kazuaki Tanaka,Asha J. Dissanayake,Josiane Santana Monteiro,Hans-Peter Grossart,Ave Suija,Gothamie Weerakoon,Javier Etayo,Andrei Tsurykau,V. Vázquez,Paul G. Mungai,Ulrike Damm,Q. R. Li,Han Zhang,Saranyaphat Boonmee,Y. Z. Lu,Alejandra Gabriela Becerra,Bryce Kendrick,Francis Q. Brearley,Jurga Motiejunaite,B. O. Sharma,Roshni Khare,Subhash Gaikwad,Dsa Wijesundara,L. Z. Tang,M. Q. He,Adam Flakus,Pamela Rodriguez-Flakus,Mikhail P. Zhurbenko,Eric H. C. McKenzie,Marc Stadler,Darbhe J. Bhat,Jian-Kui Liu,Mubashar Raza,Rajesh Jeewon,E. S. Nassonova,María Prieto,R. G. U. Jayalal,Makbule Erdoğdu,Andrey Yurkov,Martin Schnittler,Oleg N. Shchepin,Yuri K. Novozhilov,Alexandre G. S. Silva-Filho,Eleni Gentekaki,P. Liu,J. C. Cavender,Y. Kang,S. Mohammad,L. F. Zhang,R. F. Xu,Y. M. Li,Monika C. Dayarathne,Anusha H. Ekanayaka,Ting-Chi Wen,C. Y. Deng,Olinto Liparini Pereira,Sudhir Navathe,David L. Hawksworth,Xinlei Fan,Lakmali S. Dissanayake,E. Kuhnert,Marco Thines +163 more
TL;DR: This article provides an outline of the classification of the kingdom Fungi (including fossil fungi), and treats 19 phyla of fungi, including all currently described orders of fungi.
Journal ArticleDOI
Genera of phytopathogenic fungi: GOPHY 1
Yasmina Marin-Felix,Johannes Z. Groenewald,Lei Cai,Q. Chen,Seonju Marincowitz,Irene Barnes,K. Bensch,Uwe Braun,Erio Camporesi,Ulrike Damm,Z.W. de Beer,Asha J. Dissanayake,Jacqueline Edwards,Alejandra Giraldo,Margarita Hernández-Restrepo,Kevin D. Hyde,Ruvishika S. Jayawardena,Lorenzo Lombard,J. Jennifer Luangsa-ard,Alistair R. McTaggart,Amy Y. Rossman,Marcelo Sandoval-Denis,M. Shen,Roger G. Shivas,Yu Pei Tan,E. J. Van Der Linde,Michael J. Wingfield,Alan R. Wood,Jiaqi Zhang,Y. Zhang,Pedro W. Crous +30 more
TL;DR: One new genus, 26 new species, ten new combinations, and four typifications of older names are introduced to provide a stable platform for the taxonomy of phytopathogenic fungi.
Journal ArticleDOI
Notes for genera: Ascomycota
Nalin N. Wijayawardene,Kevin D. Hyde,Kunhiraman C. Rajeshkumar,David L. Hawksworth,Hugo Madrid,Paul M. Kirk,Uwe Braun,Rajshree V. Singh,Pedro W. Crous,Martin Kukwa,Robert Lücking,Cletus P. Kurtzman,Andrey Yurkov,Danny Haelewaters,André Aptroot,H. Thorsten Lumbsch,Einar Timdal,Damien Ertz,Javier Etayo,Alan J. L. Phillips,Johannes Z. Groenewald,Moslem Papizadeh,Laura Selbmann,Monika C. Dayarathne,Gothamie Weerakoon,E. B. Gareth Jones,Satinee Suetrong,Qing Tian,Rafael F. Castañeda-Ruiz,Ali H. Bahkali,Ka-Lai Pang,Kazuaki Tanaka,Dong-Qin Dai,Jariya Sakayaroj,Martina Hujslová,Lorenzo Lombard,Belle Damodara Shenoy,Ave Suija,Sajeewa S. N. Maharachchikumbura,Kasun M. Thambugala,Dhanushka N. Wanasinghe,Bharati O. Sharma,Subhash Gaikwad,Gargee Pandit,Laura Zucconi,Silvano Onofri,Eleonora Egidi,Huzefa A. Raja,Rampai Kodsueb,Marcela Eugenia da Silva Cáceres,Sergio Pérez-Ortega,Patrícia Oliveira Fiuza,Josiane Santana Monteiro,Larissa N. Vasilyeva,Roger G. Shivas,María Prieto,Mats Wedin,Ibai Olariaga,A. A. Lateef,Yamini Agrawal,Seyed Abolhassan Shahzadeh Fazeli,Mohammad Ali Amoozegar,Guo Zhu Zhao,Walter P. Pfliegler,Gunjan Sharma,Magdalena Oset,Mohamed A. Abdel-Wahab,Susumu Takamatsu,K. Bensch,Nimali I. de Silva,André De Kesel,Anuruddha Karunarathna,Saranyaphat Boonmee,Donald H. Pfister,Yong-Zhong Lu,Zong-Long Luo,Nattawut Boonyuen,Dinushani A. Daranagama,Indunil C. Senanayake,Subashini C. Jayasiri,Milan C. Samarakoon,Xiang-Yu Zeng,Mingkwan Doilom,Luis Quijada,Sillma Rampadarath,Gabriela Heredia,Asha J. Dissanayake,Ruvishika S. Jayawardana,Rekhani H. Perera,Li Zhou Tang,Chayanard Phukhamsakda,Margarita Hernández-Restrepo,Xiao-Ya Ma,Saowaluck Tibpromma,Luís Fernando Pascholati Gusmão,Darshani Weerahewa,Samantha C. Karunarathna +96 more
TL;DR: This work is intended to provide the foundation for updating the ascomycete component of the “Without prejudice list of generic names of Fungi” published in 2013, which will be developed into a list of protected generic names.
References
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Bayesian Phylogenetics with BEAUti and the BEAST 1.7
TL;DR: The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package version 1.7 is presented, which implements a family of Markov chain Monte Carlo algorithms for Bayesian phylogenetic inference, divergence time dating, coalescent analysis, phylogeography and related molecular evolutionary analyses.
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