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Colletotrichum gloeosporioides is not a common pathogen on tropical fruits

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TLDR
Contrary to previous understanding, none of the 25 Colletotrichum isolates from tropical fruits was C. gloeosporioides, which will have significant impacts on many aspects of plant pathology, pathogen diagnosis, quarantine decisions, plant breeding, and plant disease management and control.
Abstract
Mae Fah Luang University Chiang Rai, Thailand [51101010029, 52101010002]; Chinese Academy of Forestry [CAFYBB2007002]; Chinese A

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Citations
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Colletotrichum - current status and future directions.

TL;DR: A review is provided of the current state of understanding of Colletotrichum systematics, focusing on species-level data and the major clades, and the taxonomic placement of the genus is discussed.
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The Colletotrichum acutatum species complex

TL;DR: Multilocus molecular phylogenetic analysis of 331 strains previously identified as C. acutatum and other related taxa, including strains from numerous hosts with wide geographic distributions, confirmed the molecular groups previously recognised and identified a series of novel taxa.
Journal ArticleDOI

The genus Phomopsis: biology, applications, species concepts and names of common phytopathogens

TL;DR: An overview of the current status of the taxonomy in Phomopsis with special reference to biology, applications of various species, species concepts, future research perspectives and names of common pathogens is provided.
References
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The neighbor-joining method: a new method for reconstructing phylogenetic trees.

TL;DR: The neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods for reconstructing phylogenetic trees from evolutionary distance data.
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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

TL;DR: Version 4 of MEGA software expands on the existing facilities for editing DNA sequence data from autosequencers, mining Web-databases, performing automatic and manual sequence alignment, analyzing sequence alignments to estimate evolutionary distances, inferring phylogenetic trees, and testing evolutionary hypotheses.
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Molecular Evolution and Phylogenetics

TL;DR: This chapter discusses the molecular basis of evolution, the evolution of organisms based on the fossil record, and the implications of these events for phylogenetic inference.
Journal ArticleDOI

Prospects for inferring very large phylogenies by using the neighbor-joining method

TL;DR: The simulation results show that the accuracy of NJ trees decline only by approximately 5% when the number of sequences used increases from 32 to 4,096 (128 times) even in the presence of extensive variation in the evolutionary rate among lineages or significant biases in the nucleotide composition and transition/transversion ratio.
Journal ArticleDOI

Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes.

TL;DR: Nine sets of oligonucleotide primers constructed on the basis of the results of DNA hybridization of cloned genes from Neurospora crassa and Aspergillus nidulans may provide useful tools for phylogenetic studies and genome analyses in filamentous ascomycetes and deuteromycete affiliations, as well as for the rapid differentiation of fungal species by PCR.
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