The Colletotrichum acutatum species complex
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TLDR
Multilocus molecular phylogenetic analysis of 331 strains previously identified as C. acutatum and other related taxa, including strains from numerous hosts with wide geographic distributions, confirmed the molecular groups previously recognised and identified a series of novel taxa.About:
This article is published in Studies in Mycology.The article was published on 2012-09-15 and is currently open access. It has received 586 citations till now.read more
Citations
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The Colletotrichum gloeosporioides species complex
TL;DR: The limit of the Colletotrichum gloeosporioides species complex is defined genetically, based on a strongly supported clade within the Col letteredum ITS gene tree, as well as all taxa accepted within this clade, as it has been applied in the literature for the past 50 years.
Journal ArticleDOI
Colletotrichum - current status and future directions.
TL;DR: A review is provided of the current state of understanding of Colletotrichum systematics, focusing on species-level data and the major clades, and the taxonomic placement of the genus is discussed.
Journal ArticleDOI
Diaporthe: a genus of endophytic, saprobic and plant pathogenic fungi
Renata R. Gomes,Chirlei Glienke,S.I.R. Videira,Lorenzo Lombard,Johannes Z. Groenewald,Pedro W. Crous +5 more
TL;DR: Several taxa of Diaporthe are confirmed to have wide host ranges, suggesting that they move freely among hosts, frequently co-colonising diseased or dead tissue.
Journal ArticleDOI
The Colletotrichum boninense species complex
Ulrike Damm,Paul F. Cannon,J.H.C. Woudenberg,Peter R. Johnston,Bevan S. Weir,Yu Pei Tan,Roger G. Shivas,Pedro W. Crous,Pedro W. Crous +8 more
TL;DR: Seven of the new species are only known from New Zealand, perhaps reflecting a sampling bias, and the new combination C. phyllanthi was made, and C. dracaenae Petch was epitypified and the name replaced with C. petchii.
Journal ArticleDOI
Towards a natural classification and backbone tree for Sordariomycetes
Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Kevin D. Hyde,E. B. Gareth Jones,Eric H. C. McKenzie,Shi-Ke Huang,Shi-Ke Huang,Mohamed A. Abdel-Wahab,Dinushani A. Daranagama,Monika C. Dayarathne,Melvina J. D’souza,Ishani D. Goonasekara,Sinang Hongsanan,Ruvishika S. Jayawardena,Paul M. Kirk,Sirinapa Konta,Jian-Kui Liu,Jian-Kui Liu,Zuo-Yi Liu,Chada Norphanphoun,Ka-Lai Pang,Rekhani H. Perera,Indunil C. Senanayake,Qiu-Ju Shang,Belle Damodara Shenoy,Yuan-Pin Xiao,Yuan-Pin Xiao,Ali H. Bahkali,Ji-Chuan Kang,Sayanh Somrothipol,Satinee Suetrong,Ting-Chi Wen,Jianchu Xu,Jianchu Xu +33 more
TL;DR: An updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the class are provided and new links between sexual and asexual genera and thus synonymies are provided.
References
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MrBayes 3: Bayesian phylogenetic inference under mixed models
TL;DR: MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models to analyze heterogeneous data sets and explore a wide variety of structured models mixing partition-unique and shared parameters.
Journal ArticleDOI
ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts.
M. Gardes,Thomas D. Bruns +1 more
TL;DR: In this paper, two taxon-selective primers for the internal transcribed spacer (ITS) region in the nuclear ribosomal repeat unit were proposed, which were intended to be specific to fungi and basidiomycetes, respectively.
Book
PAUP* 4.0 : Phylogenetic Analysis Using Parsimony
TL;DR: PAUP* 4.0 Beta is a major upgrade of the bestselling software for the inference of evolutionary trees, for use in Macintosh or Windows/DOS-based formats.