Journal ArticleDOI
Towards a natural classification and backbone tree for Sordariomycetes
Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Kevin D. Hyde,E. B. Gareth Jones,Eric H. C. McKenzie,Shi-Ke Huang,Shi-Ke Huang,Mohamed A. Abdel-Wahab,Dinushani A. Daranagama,Monika C. Dayarathne,Melvina J. D’souza,Ishani D. Goonasekara,Sinang Hongsanan,Ruvishika S. Jayawardena,Paul M. Kirk,Sirinapa Konta,Jian-Kui Liu,Jian-Kui Liu,Zuo-Yi Liu,Chada Norphanphoun,Ka-Lai Pang,Rekhani H. Perera,Indunil C. Senanayake,Qiu-Ju Shang,Belle Damodara Shenoy,Yuan-Pin Xiao,Yuan-Pin Xiao,Ali H. Bahkali,Ji-Chuan Kang,Sayanh Somrothipol,Satinee Suetrong,Ting-Chi Wen,Jianchu Xu,Jianchu Xu +33 more
TLDR
An updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the class are provided and new links between sexual and asexual genera and thus synonymies are provided.Abstract:
Sordariomycetes is one of the largest classes of Ascomycota and is characterised by perithecial ascomata and inoperculate unitunicate asci. The class includes many important plant pathogens, as well as endophytes, saprobes, epiphytes, and fungicolous, lichenized or lichenicolous taxa. The class includes freshwater, marine and terrestrial taxa and has a worldwide distribution. This paper provides an updated outline of the Sordariomycetes and a backbone tree incorporating asexual and sexual genera in the class. Based on phylogeny and morphology we introduced three subclasses; Diaporthomycetidae, Lulworthiomycetidae and Meliolomycetidae and five orders; Amplistromatales, Annulatascales, Falcocladiales, Jobellisiales and Togniniales. The outline is based on literature to the end of 2014 and the backbone tree published in this paper. Notes for 397 taxa with information, such as new family and genera novelties, novel molecular data published since the Outline of Ascomycota 2009, and new links between sexual and asexual genera and thus synonymies, are provided. The Sordariomycetes now comprises six subclasses, 28 orders, 90 families and 1344 genera. In addition a list of 829 genera with uncertain placement in Sordariomycetes is also provided.read more
Citations
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Journal ArticleDOI
Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
Guo Jie Li,Kevin D. Hyde,Kevin D. Hyde,Kevin D. Hyde,Rui-Lin Zhao,Sinang Hongsanan,Sinang Hongsanan,Faten A. Abdel-Aziz,Mohamed A. Abdel-Wahab,Mohamed A. Abdel-Wahab,Pablo Alvarado,Genivaldo Alves-Silva,Joseph F. Ammirati,Hiran A. Ariyawansa,Abhishek Baghela,Ali H. Bahkali,Michael Beug,D. Jayarama Bhat,Dimitar Bojantchev,Thitiya Boonpratuang,Timur S. Bulgakov,Erio Camporesi,Marcela C. Boro,Oldriska Ceska,Dyutiparna Chakraborty,Jia-Jia Chen,K. W. Thilini Chethana,Putarak Chomnunti,Giovanni Consiglio,Bao-Kai Cui,Dong-Qin Dai,Yu Cheng Dai,Dinushani A. Daranagama,Dinushani A. Daranagama,Kanad Das,Monika C. Dayarathne,Monika C. Dayarathne,Eske De Crop,Rafael J. V. De Oliveira,Carlos Alberto Fragoso de Souza,José I. de Souza,Bryn T. M. Dentinger,Bryn T. M. Dentinger,Asha J. Dissanayake,Mingkwan Doilom,Mingkwan Doilom,E. Ricardo Drechsler-Santos,Masoomeh Ghobad-Nejhad,Sean P. Gilmore,Aristóteles Góes-Neto,Michał Gorczak,Charles H. Haitjema,Kalani Kanchana Hapuarachchi,Kalani Kanchana Hapuarachchi,Akira Hashimoto,Akira Hashimoto,Mao Qiang He,Mao Qiang He,John K. Henske,Kazuyuki Hirayama,María Josefina Iribarren,Subashini C. Jayasiri,Ruvishika S. Jayawardena,Sun Jeong Jeon,Gustavo Henrique Jerônimo,Ana L. Jesus,E. B. Gareth Jones,Ji Chuan Kang,Samantha C. Karunarathna,Samantha C. Karunarathna,Paul M. Kirk,Sirinapa Konta,Sirinapa Konta,Eric Kuhnert,Ewald Langer,Haeng Sub Lee,Hyang Burm Lee,Wen-Jing Li,Wen-Jing Li,Xinghong Li,Kare Liimatainen,Diogo Xavier Lima,Chuan Gen Lin,Chuan Gen Lin,Jian-Kui Liu,Xings Zhong Liu,Zuo Yi Liu,J. Jennifer Luangsa-ard,Robert Lücking,H. Thorsten Lumbsch,Saisamorn Lumyong,Eduardo M. Leaño,Agostina V. Marano,Misato Matsumura,Misato Matsumura,Eric H. C. McKenzie,Suchada Mongkolsamrit,Peter E. Mortimer,Thi Thuong Thuong Nguyen,Tuula Niskanen,Chada Norphanphoun,Chada Norphanphoun,Michelle A. O’Malley,Sittiporn Parnmen,Julia Pawłowska,Rekhani H. Perera,Rekhani H. Perera,Rungtiwa Phookamsak,Rungtiwa Phookamsak,Chayanard Phukhamsakda,Chayanard Phukhamsakda,Carmen L. A. Pires-Zottarelli,Olivier Raspé,Mateus Arduvino Reck,Sarah C. O. Rocha,André L. C. M. A. de Santiago,Indunil C. Senanayake,Ledo Setti,Qiu Ju Shang,Sanjay K. Singh,Esteban Benjamin Sir,Kevin V. Solomon,Jie Song,Prasert Srikitikulchai,Marc Stadler,Satinee Suetrong,Hayato Takahashi,Takumasa Takahashi,Kazuaki Tanaka,Li Ping Tang,Kasun M. Thambugala,Donnaya Thanakitpipattana,Michael K. Theodorou,Benjarong Thongbai,Tuksaporn Thummarukcharoen,Qing Tian,Qing Tian,Saowaluck Tibpromma,Saowaluck Tibpromma,Annemieke Verbeken,Alfredo Vizzini,Josef Vlasák,Kerstin Voigt,Dhanushka N. Wanasinghe,Dhanushka N. Wanasinghe,Yong Wang,Gothamie Weerakoon,Hua An Wen,Ting-Chi Wen,Nalin N. Wijayawardene,Sarunyou Wongkanoun,Marta Wrzosek,Yuan Pin Xiao,Yuan Pin Xiao,Jianchu Xu,Ji Ye Yan,Jing Yang,Shu Da Yang,Yu Hu,Jin-Feng Zhang,Jie Zhao,Li-Wei Zhou,Derek Peršoh,Alan J. L. Phillips,Sajeewa S. N. Maharachchikumbura +164 more
TL;DR: This paper is a compilation of notes on 142 fungal taxa, including five new families, 20 new genera, and 100 new species, representing a wide taxonomic and geographic range.
Journal ArticleDOI
The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts
Subashini C. Jayasiri,Kevin D. Hyde,Kevin D. Hyde,Kevin D. Hyde,Hiran A. Ariyawansa,Hiran A. Ariyawansa,Jayarama D. Bhat,Bart Buyck,Lei Cai,Yu-Cheng Dai,Kamel A. Abd-Elsalam,Damien Ertz,Iman Hidayat,Rajesh Jeewon,E. B. Gareth Jones,Ali H. Bahkali,Samantha C. Karunarathna,Samantha C. Karunarathna,Jian-Kui Liu,Jian-Kui Liu,J. Jennifer Luangsa-ard,H. Thorsten Lumbsch,Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Eric H. C. McKenzie,Jean-Marc Moncalvo,Masoomeh Ghobad-Nejhad,Henrik R. Nilsson,Ka-Lai Pang,Olinto Liparini Pereira,Alan J. L. Phillips,Olivier Raspé,Adam W. Rollins,Andrea Irene Romero,Javier Etayo,Faruk Selçuk,Steven L. Stephenson,Satinee Suetrong,Joanne E. Taylor,Clement K. M. Tsui,Alfredo Vizzini,Mohamed A. Abdel-Wahab,Ting-Chi Wen,Saranyaphat Boonmee,Dong-Qin Dai,Dong-Qin Dai,Dinushani A. Daranagama,Dinushani A. Daranagama,Asha J. Dissanayake,Anusha H. Ekanayaka,Sally C. Fryar,Sinang Hongsanan,Ruvishika S. Jayawardena,Wen-Jing Li,Wen-Jing Li,Rekhani H. Perera,Rungtiwa Phookamsak,Nimali I. de Silva,Kasun M. Thambugala,Kasun M. Thambugala,Qing Tian,Qing Tian,Nalin N. Wijayawardene,Nalin N. Wijayawardene,Rui-Lin Zhao,Qi Zhao,Ji-Chuan Kang,Itthayakorn Promputtha +67 more
TL;DR: The present paper introduces the FoF database to the scientific community and briefly reviews some of the problems associated with classification and identification of the main fungal groups.
Journal ArticleDOI
Families of Sordariomycetes
Sajeewa S. N. Maharachchikumbura,Sajeewa S. N. Maharachchikumbura,Kevin D. Hyde,E. B. Gareth Jones,Eric H. C. McKenzie,Jayarama D. Bhat,Monika C. Dayarathne,Shi Ke Huang,Shi Ke Huang,Chada Norphanphoun,Indunil C. Senanayake,Rekhani H. Perera,Qiu Ju Shang,Yuan-Pin Xiao,Yuan-Pin Xiao,Melvina J. D’souza,Sinang Hongsanan,Ruvishika S. Jayawardena,Dinushani A. Daranagama,Dinushani A. Daranagama,Sirinapa Konta,Ishani D. Goonasekara,Wen Ying Zhuang,Rajesh Jeewon,Alan J. L. Phillips,Mohamed A. Abdel-Wahab,Mohamed A. Abdel-Wahab,Abdullah M. Al-Sadi,Ali H. Bahkali,Saranyaphat Boonmee,Nattawut Boonyuen,Ratchadawan Cheewangkoon,Asha J. Dissanayake,Ji-Chuan Kang,Qi Rui Li,Qi Rui Li,Jian-Kui Liu,Xingzhong Liu,Zuo Yi Liu,J. Jennifer Luangsa-ard,Ka-Lai Pang,Rungtiwa Phookamsak,Itthayakorn Promputtha,Satinee Suetrong,Marc Stadler,Ting-Chi Wen,Nalin N. Wijayawardene +46 more
TL;DR: This paper reviews the 107 families of the class Sordariomycetes and provides a modified backbone tree based on phylogenetic analysis of four combined loci, with a maximum five representative taxa from each family, where available.
Journal ArticleDOI
Notes for genera: Ascomycota
Nalin N. Wijayawardene,Kevin D. Hyde,Kunhiraman C. Rajeshkumar,David L. Hawksworth,Hugo Madrid,Paul M. Kirk,Uwe Braun,Rajshree V. Singh,Pedro W. Crous,Martin Kukwa,Robert Lücking,Cletus P. Kurtzman,Andrey Yurkov,Danny Haelewaters,André Aptroot,H. Thorsten Lumbsch,Einar Timdal,Damien Ertz,Javier Etayo,Alan J. L. Phillips,Johannes Z. Groenewald,Moslem Papizadeh,Laura Selbmann,Monika C. Dayarathne,Gothamie Weerakoon,E. B. Gareth Jones,Satinee Suetrong,Qing Tian,Rafael F. Castañeda-Ruiz,Ali H. Bahkali,Ka-Lai Pang,Kazuaki Tanaka,Dong-Qin Dai,Jariya Sakayaroj,Martina Hujslová,Lorenzo Lombard,Belle Damodara Shenoy,Ave Suija,Sajeewa S. N. Maharachchikumbura,Kasun M. Thambugala,Dhanushka N. Wanasinghe,Bharati O. Sharma,Subhash Gaikwad,Gargee Pandit,Laura Zucconi,Silvano Onofri,Eleonora Egidi,Huzefa A. Raja,Rampai Kodsueb,Marcela Eugenia da Silva Cáceres,Sergio Pérez-Ortega,Patrícia Oliveira Fiuza,Josiane Santana Monteiro,Larissa N. Vasilyeva,Roger G. Shivas,María Prieto,Mats Wedin,Ibai Olariaga,A. A. Lateef,Yamini Agrawal,Seyed Abolhassan Shahzadeh Fazeli,Mohammad Ali Amoozegar,Guo Zhu Zhao,Walter P. Pfliegler,Gunjan Sharma,Magdalena Oset,Mohamed A. Abdel-Wahab,Susumu Takamatsu,K. Bensch,Nimali I. de Silva,André De Kesel,Anuruddha Karunarathna,Saranyaphat Boonmee,Donald H. Pfister,Yong-Zhong Lu,Zong-Long Luo,Nattawut Boonyuen,Dinushani A. Daranagama,Indunil C. Senanayake,Subashini C. Jayasiri,Milan C. Samarakoon,Xiang-Yu Zeng,Mingkwan Doilom,Luis Quijada,Sillma Rampadarath,Gabriela Heredia,Asha J. Dissanayake,Ruvishika S. Jayawardana,Rekhani H. Perera,Li Zhou Tang,Chayanard Phukhamsakda,Margarita Hernández-Restrepo,Xiao-Ya Ma,Saowaluck Tibpromma,Luís Fernando Pascholati Gusmão,Darshani Weerahewa,Samantha C. Karunarathna +96 more
TL;DR: This work is intended to provide the foundation for updating the ascomycete component of the “Without prejudice list of generic names of Fungi” published in 2013, which will be developed into a list of protected generic names.
Journal ArticleDOI
Classification of marine Ascomycota, Basidiomycota, Blastocladiomycota and Chytridiomycota
E. B. Gareth Jones,Satinee Suetrong,Jariya Sakayaroj,Ali H. Bahkali,Mohamed A. Abdel-Wahab,Mohamed A. Abdel-Wahab,Teun Boekhout,Ka-Lai Pang +7 more
TL;DR: The Halosphaeriaceae remains the largest family of marine fungi with 141 species in 59 genera, while the most specious genera are Aspergillus, Penicillium and the yeast genus Candida.
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