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Journal ArticleDOI

Establishing a time-scale for plant evolution

TLDR
A post-Jurassic origin of angiosperms and a post-Cambrian origin of land plants are rejected, and it is suggested that the establishment of the major embryophyte lineages occurred at a much slower tempo than suggested in most previous studies.
Abstract
• Plants have utterly transformed the planet, but testing hypotheses of causality requires a reliable time-scale for plant evolution. While clock methods have been extensively developed, less attention has been paid to the correct interpretation and appropriate implementation of fossil data. • We constructed 17 calibrations, consisting of minimum constraints and soft maximum constraints, for divergences between model representatives of the major land plant lineages. Using a data set of seven plastid genes, we performed a cross-validation analysis to determine the consistency of the calibrations. Six molecular clock analyses were then conducted, one with the original calibrations, and others exploring the impact on divergence estimates of changing maxima at basal nodes, and prior probability densities within calibrations. • Cross-validation highlighted Tracheophyta and Euphyllophyta calibrations as inconsistent, either because their soft maxima were overly conservative or because of undetected rate variation. Molecular clock analyses yielded estimates ranging from 568-815 million yr before present (Ma) for crown embryophytes and from 175-240 Ma for crown angiosperms. • We reject both a post-Jurassic origin of angiosperms and a post-Cambrian origin of land plants. Our analyses also suggest that the establishment of the major embryophyte lineages occurred at a much slower tempo than suggested in most previous studies. These conclusions are entirely compatible with current palaeobotanical data, although not necessarily with their interpretation by palaeobotanists.

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Dissertation

Controlled auxin biosynthesis and transport are important for developmental decisions in the early diverging land plant Physcomitrella patens

TL;DR: This thesis demonstrates that regulated distribution of auxin was operational in cell-fate decisions already in the early land plants, and that auxin has played a key role in the evolution of complex land plant structures.
Dissertation

Towards preserving threatened grassland plant species and habitats - seed longevity, seed viability and phylogeography

TL;DR: The aim of this thesis was to elucidate the origins of rare and threatened calcareous grasslands species and to provide tools for a successful conservation of biodiversity via seeds by comprising various aspects, which range from phylogeographic research to seed science.
Journal ArticleDOI

Was There a Cambrian Explosion on Land? The Case of Arthropod Terrestrialization

TL;DR: In this article , the authors use the arthropods as a case study of the possible cryptic Cambrian explosion on land, and highlight approaches for reconciling the disagreement between molecular clock estimates and the fossil record for the arachod colonization of land.
Journal ArticleDOI

Terrestrialization in the Ordovician

TL;DR: In this paper , the authors review the evidence for terrestrial organisms during the Ordovician (microbial, land plant, fungal, animal) and for the nature of the terrestrial biota.
Posted ContentDOI

Early Archean origin of heterodimeric Photosystem I

TL;DR: This work shows, using sequence comparisons and Bayesian relaxed molecular clocks, that this gene duplication event may have occurred more than 3.4 billion years ago, long before the most recent common ancestor of Cyanobacteria and the Great Oxidation Event.
References
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Journal ArticleDOI

PAML 4: Phylogenetic Analysis by Maximum Likelihood

TL;DR: PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML), which can be used to estimate parameters in models of sequence evolution and to test interesting biological hypotheses.
Journal ArticleDOI

Relaxed Phylogenetics and Dating with Confidence

TL;DR: In this paper, the authors introduce a new approach to perform relaxed phylogenetic analysis, which can be used to estimate phylogenies and divergence times in the face of uncertainty in evolutionary rates and calibration times.
Book

A Geologic time scale

W. B. Harland
BookDOI

A Geologic Time Scale 2004

TL;DR: Gradstein et al. as discussed by the authors proposed a chronostratigraphy approach for linking time and rock in the context of geologic time scales, including the geomagnetic polarity time scale and stable isotope geochronology.
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