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Journal ArticleDOI

Establishing a time-scale for plant evolution

TLDR
A post-Jurassic origin of angiosperms and a post-Cambrian origin of land plants are rejected, and it is suggested that the establishment of the major embryophyte lineages occurred at a much slower tempo than suggested in most previous studies.
Abstract
• Plants have utterly transformed the planet, but testing hypotheses of causality requires a reliable time-scale for plant evolution. While clock methods have been extensively developed, less attention has been paid to the correct interpretation and appropriate implementation of fossil data. • We constructed 17 calibrations, consisting of minimum constraints and soft maximum constraints, for divergences between model representatives of the major land plant lineages. Using a data set of seven plastid genes, we performed a cross-validation analysis to determine the consistency of the calibrations. Six molecular clock analyses were then conducted, one with the original calibrations, and others exploring the impact on divergence estimates of changing maxima at basal nodes, and prior probability densities within calibrations. • Cross-validation highlighted Tracheophyta and Euphyllophyta calibrations as inconsistent, either because their soft maxima were overly conservative or because of undetected rate variation. Molecular clock analyses yielded estimates ranging from 568-815 million yr before present (Ma) for crown embryophytes and from 175-240 Ma for crown angiosperms. • We reject both a post-Jurassic origin of angiosperms and a post-Cambrian origin of land plants. Our analyses also suggest that the establishment of the major embryophyte lineages occurred at a much slower tempo than suggested in most previous studies. These conclusions are entirely compatible with current palaeobotanical data, although not necessarily with their interpretation by palaeobotanists.

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Journal ArticleDOI

A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity

TL;DR: This time-frame documents an early phylogenetic proliferation that led to the establishment of major angiosperm lineages, and the origin of over half of extant families, in the Cretaceous.
Journal Article

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

TL;DR: A variety of local and relaxed clock methods have been proposed and implemented for phylogenetic divergence dating as discussed by the authors, which allows different molecular clocks in different parts of the phylogenetic tree, thereby retaining the advantages of the classical molecular clock while casting off the restrictive assumption of a single, global rate of substitution.
Journal ArticleDOI

Best practices for justifying fossil calibrations

TL;DR: A specimen-based protocol for selecting and documenting relevant fossils is presented and future directions for evaluating and utilizing phylogenetic and temporal data from the fossil record are discussed, to establish the best practices for justifying fossils used for the temporal calibration of molecular phylogenies.
Journal ArticleDOI

The timescale of early land plant evolution

TL;DR: A timescale for early land plant evolution that integrates over topological uncertainty by exploring the impact of competing hypotheses on bryophyte−tracheophyte relationships, among other variables, on divergence time estimation is established.
Journal ArticleDOI

Estimating divergence times in large molecular phylogenies

TL;DR: RelTime is presented, a method that estimates relative times of divergences for all branching points (nodes) in very large phylogenetic trees without assuming a specific model for lineage rate variation or specifying any clock calibrations.
References
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Journal ArticleDOI

Is the anthophyte hypothesis alive and well? New evidence from the reproductive structures of Bennettitales.

TL;DR: Characters of bennettitalean plants are summarized and new evidence for the structure of cones and seeds is presented that help clarify relationships of Bennettitales to flowering plants, Gnetales, and other potential angiosperm sister groups.
Journal ArticleDOI

Molecular phylogenies in angiosperm evolution.

TL;DR: Cloned and sequenced cDNAs for the glyceraldehyde-3-phosphate dehydrogenase of glycolysis, gapC, from a bryophyte, a gymnosperm, and three angiosperms and chloroplast and nuclear sequence data taken together suggest that the separation of monocotyledonous and dicotylingonous lineages took place in late Carboniferous times.
Journal ArticleDOI

A Likelihood Method for Assessing Molecular Divergence Time Estimates and the Placement of Fossil Calibrations

TL;DR: A method for the objective assessment of the likelihood of inferred divergence times to evaluate the placement of fossil constraints using information from the broader fossil record and the use of "likelihood checkpoints" will allow for the comparison of inferred dates across data sets and across taxonomic groups to place divergence time estimates into a broader evolutionary timescale.
Journal ArticleDOI

Records of Cooksonia-type sporangia from late Wenlock strata in Ireland

TL;DR: The earliest record of a fossil flora containing Cooksonia type sporangia was from a mid-Ludlow (Silurian) locality in Wales as discussed by the authors, which was collected in the Devilsbit Mountain district of County Tipperary, Ireland.
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