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Journal ArticleDOI

Establishing a time-scale for plant evolution

TLDR
A post-Jurassic origin of angiosperms and a post-Cambrian origin of land plants are rejected, and it is suggested that the establishment of the major embryophyte lineages occurred at a much slower tempo than suggested in most previous studies.
Abstract
• Plants have utterly transformed the planet, but testing hypotheses of causality requires a reliable time-scale for plant evolution. While clock methods have been extensively developed, less attention has been paid to the correct interpretation and appropriate implementation of fossil data. • We constructed 17 calibrations, consisting of minimum constraints and soft maximum constraints, for divergences between model representatives of the major land plant lineages. Using a data set of seven plastid genes, we performed a cross-validation analysis to determine the consistency of the calibrations. Six molecular clock analyses were then conducted, one with the original calibrations, and others exploring the impact on divergence estimates of changing maxima at basal nodes, and prior probability densities within calibrations. • Cross-validation highlighted Tracheophyta and Euphyllophyta calibrations as inconsistent, either because their soft maxima were overly conservative or because of undetected rate variation. Molecular clock analyses yielded estimates ranging from 568-815 million yr before present (Ma) for crown embryophytes and from 175-240 Ma for crown angiosperms. • We reject both a post-Jurassic origin of angiosperms and a post-Cambrian origin of land plants. Our analyses also suggest that the establishment of the major embryophyte lineages occurred at a much slower tempo than suggested in most previous studies. These conclusions are entirely compatible with current palaeobotanical data, although not necessarily with their interpretation by palaeobotanists.

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Citations
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Journal ArticleDOI

Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions

TL;DR: Despite the similarity among land–plant life cycles, they differ in one significant aspect: in the three bryophyte groups, the haploid gametophytic stage is the dominant vegetative stage, whereas in vascular plants the diploid sporophyte dominates.
Journal ArticleDOI

Fire-stimulated flowering among resprouters and geophytes in Australia and South Africa

TL;DR: The evolutionary history of fsf has been explored recently in orchids, proteas, blood roots, droseras, and mistletoes and shown to stretch back over a period of at least 50 million years, indicating that flowering in many groups has a long association with fire as an agent of natural selection.
Journal ArticleDOI

Dating the Diversification of the Major Lineages of Ascomycota (Fungi)

TL;DR: Molecular dating is performed to estimate the divergence times of most of the major groups of Ascomycota, including estimates for classes, orders and families of both lichenized and non–lichenized Ascomygota, many of which had not been previously dated.
Journal ArticleDOI

Evolutionary history of plant microRNAs

TL;DR: The published repertoire of plant miRNAs is reviewed, discriminating those that have been correctly annotated, and prevailing hypotheses on the tempo and mode of miRNA evolution within the plant kingdom are explored.
Journal ArticleDOI

The Devonian Period

Mary O'Donoghue
- 07 Nov 2005 - 
References
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Journal ArticleDOI

PAML 4: Phylogenetic Analysis by Maximum Likelihood

TL;DR: PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML), which can be used to estimate parameters in models of sequence evolution and to test interesting biological hypotheses.
Journal ArticleDOI

Relaxed Phylogenetics and Dating with Confidence

TL;DR: In this paper, the authors introduce a new approach to perform relaxed phylogenetic analysis, which can be used to estimate phylogenies and divergence times in the face of uncertainty in evolutionary rates and calibration times.
Book

A Geologic time scale

W. B. Harland
BookDOI

A Geologic Time Scale 2004

TL;DR: Gradstein et al. as discussed by the authors proposed a chronostratigraphy approach for linking time and rock in the context of geologic time scales, including the geomagnetic polarity time scale and stable isotope geochronology.
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