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Finding gene-expression patterns in bacterial biofilms

Christophe Beloin, +1 more
- 01 Jan 2005 - 
- Vol. 13, Iss: 1, pp 16-19
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TLDR
Finding common bacterial biofilm gene-expression patterns through global expression analysis remains difficult, due to the apparently minimal overlap between functions involved in biofilm formation by different bacteria.
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This article is published in Trends in Microbiology.The article was published on 2005-01-01 and is currently open access. It has received 221 citations till now. The article focuses on the topics: Biofilm.

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Citations
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Signals, regulatory networks, and materials that build and break bacterial biofilms

TL;DR: A portion of this large body of work including the environmental signals and signaling pathways that regulate biofilm formation, the components of the biofilm matrix, and the mechanisms and regulation of biofilm dispersal are reviewed.
Journal ArticleDOI

Antibiotics versus biofilm: an emerging battleground in microbial communities

TL;DR: CRISPR-CAS (gene editing technique) and photo dynamic therapy (PDT) are proposed to be used as therapeutic approaches to subside bacterial biofim infections, especially caused by deadly drug resistant bad bugs.
Journal ArticleDOI

Resistance of bacterial biofilms to disinfectants: a review

TL;DR: This review will discuss the mechanisms identified as playing a role in biofilm resistance to disinfectants, as well as novel anti-biofilm strategies that have recently been explored.
Journal ArticleDOI

Bacterial biofilm development as a multicellular adaptation: antibiotic resistance and new therapeutic strategies.

TL;DR: Novel strategies that specifically target the biofilm mode of growth have been recently described, thus providing the basis for future anti-biofilm therapy.
Journal ArticleDOI

The sociobiology of biofilms

TL;DR: It is argued that understanding this balance between competition and cooperation is central to building a complete and predictive model of biofilm formation, and it is concluded that the appearance of organization in biofilms can emerge without active coordination.
References
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Journal ArticleDOI

Biofilm Formation as Microbial Development

TL;DR: The results reviewed in this article indicate that the formation of biofilms serves as a new model system for the study of microbial development.
Journal ArticleDOI

Pseudomonas aeruginosa Displays Multiple Phenotypes during Development as a Biofilm

TL;DR: The results demonstrate that P. aeruginosa displays multiple phenotypes during biofilm development and that knowledge of stage-specific physiology may be important in detecting and controlling biofilm growth.
Journal ArticleDOI

Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili

TL;DR: It is demonstrated that E. coli forms biofilms on multiple abiotic surfaces in a nutrient‐dependent fashion and type I pili (harbouring the mannose‐specific adhesin, FimH) are required for initial surface attachment and thatMannose inhibits normal attachment.
Journal ArticleDOI

Gene expression in Pseudomonas aeruginosa biofilms

TL;DR: DNA microarrays show that gene expression in biofilm cells is similar to that in free-living cells but there are a small number of significant differences, which points to mechanisms of biofilm resistance to antibiotics.
Journal ArticleDOI

Genes involved in matrix formation in Pseudomonas aeruginosa PA14 biofilms

TL;DR: Results suggest that the pel genes are responsible for the production of a glucose‐rich matrix material required for the formation of biofilms by P. aeruginosa PA14.
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Frequently Asked Questions (7)
Q1. What are the contributions mentioned in the paper "Finding gene-expression patterns in bacterial biofilms" ?

HAL this paper is a multi-disciplinary open access archive for the deposit and dissemination of scientific research documents, whether they are published or not. 

Strategies adapted to the study of highly heterogeneous environments such as in vivo or promoter-trap based strategies (STM, IVET, RIVET) [29] or gene-targeted gfp fusions have been underused and will also certainly be helpful identifying genes only transiently expressed within biofilm sub-populations. 

The transcriptome and proteome analyses performed on biofilms taken at different ages demonstrated that gene expression is changing along time. 

due to the absence of experimental gold standards, extracting a biofilm gene expression pattern from the available data is still difficult. 

Membrane stress, triggered by bacteria-surface and bacteria-bacteria interactions, could therefore constitute anatural signal for the activation of several regulatory pathways that would promote stabilization and/or maturation of the biofilm. 

Owing to the apparently minimal overlap between functions involved in biofilm formation by different bacteria, exploring the biofilm lifestyle could prove to be a case-by-case task for which global approaches show their limits. 

The prevalence of genes of unknown function in biofilm differentially expressed genesBiofilms are considered to be environments where new, or previously unrecognized,biological properties could be expressed.