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Open AccessJournal ArticleDOI

Gene reactivation: a tool for the isolation of mammalian DNA methylation mutants.

TLDR
It is proposed that the phenotype of tsm cells is due to a mutation involved in the regulation of DNA methylation, and the further characterization of this and other mammalian mutants should help to clarify the physiological role of DNAmethylation, as well as its regulation.
Abstract
We report the isolation and characterization of a mammalian strain (tsm) that has a temperature-sensitive mutation in DNA methylation. The isolation procedure was based on the observation that treatment of a CHO TK- MT- cell line with demethylating agents introduces up to 46% demethylation, resulting in phenotypic reversion and transcriptional activation of the thymidine kinase (TK) and metallothionein (MT) genes at frequencies ranging from 1% to 59%. Seven thousand individual colonies from an EMS-mutagenized CHO TK- MT- population were screened for spontaneous reversion to TK+ phenotype after treatment at 39 degrees C. Successful isolates were subsequently examined for MT+ reversion. A single clone (tsm) was obtained that showed temperature-dependent reactivation of both TK and MT genes at frequencies of 7.2 X 10(-4) and 6 X 10(-4), respectively. The tsm cells were viable at 39 degrees C and showed no increased mutation frequency. Reactivation correlated with transcriptional activation of the respective genes, whereas backreversion to the TK- phenotype was associated with transcriptional inactivation. TK- backrevertants were reactivable again with demethylating agents. Although demethylation in tsm cells was not detectable by HPLC, Southern blot analysis revealed that reactivants, irrespective of their mode of generation, showed specific demethylation of both TK and MT genes. Also, after about 150 cell generations after treatment, reactivants from both temperature-induced tsm and cells exposed to demethylating agents gained 60% and 23%, respectively, in 5-methylcytosine (5mC). It is proposed that the phenotype of tsm cells is due to a mutation involved in the regulation of DNA methylation. The further characterization of this and other mammalian mutants should help to clarify the physiological role of DNA methylation, as well as its regulation.

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Bacteria-related changes in host DNA methylation and the risk for CRC.

TL;DR: This review highlights holistic approaches to understanding how gut microbiota contributes to CRC and particularly focuses herein on bacteria-related changes in host DNA methylation and the risk for CRC.
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Strategies for DNA methylation analysis in developmental studies

TL;DR: A critical overview of methods applied primarily to m5C detection with particular emphasis on technical improvements of the classical bisulfite‐conversion protocol is provided.

Genetic and epigenetic mechanisms of tumor predisposition in hereditary non-polyposis colorectal carcinoma and sporadic cancers

TL;DR: Results showed for the first time a distinct genetic and epigenetic signature in the Egyptian CRC marked by high methylation of microsatellite, suggesting that complex hyperplasia without atypia is equally important as a precursor lesion of malignancy.
Journal ArticleDOI

Regulation of O6-methylguanine-DNA methyltransferase expression in the Burkitt's lymphoma cell line Raji

TL;DR: It is reported here that in addition to the methyltransferase and thymidine kinase, a third enzyme with an unrelated function, galactokinase, is also not expressed in Raji cells.
References
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Journal ArticleDOI

A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity

TL;DR: A technique for conveniently radiolabeling DNA restriction endonuclease fragments to high specific activity is described, and these "oligolabeled" DNA fragments serve as efficient probes in filter hybridization experiments.
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Mutations of bacteria from virus sensitivity to virus resistance

TL;DR: This article reported Luria and Delbruck's breakthrough study in which they established that viruses do not induce mutations in bacteria, but that virus-resisting mutations are spontaneous.
Journal ArticleDOI

Cellular differentiation, cytidine analogs and DNA methylation

TL;DR: Results provide experimental evidence for a role for DNA modification in differentiation, and suggest that cytidine analogs containing an altered 5 position perturb previously established methylation patterns to yield new cellular phenotypes.
Journal ArticleDOI

The distribution of the numbers of mutants in bacterial populations.

TL;DR: Statistical calculations are made of the distribution numbers of mutants in a culture of bacteria in which the number of mutants increases on account of new mutations and of division of old mutants, which enable the mutation rate to be inferred from experiments with parallel cultures.
Journal ArticleDOI

X inactivation, differentiation, and DNA methylation.

TL;DR: A model based on DNA methylation is proposed to explain the initiation and maintenance of mammalian X inactivation and certain aspects of other permanent events in eukaryotic cell differentiation using sequence-specific DNA methylases that methylate unmethylated sites with great difficulty but easily methylate half-methylated sites.