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Genetic Architecture of Phosphorus Use Efficiency in Tropical Maize Cultivated in a Low-P Soil

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TLDR
Evaluating the genetic architecture of PUE in tropical maize using multiple interval mapping for design III in a population of 140 RILs backcrossed with both parental lines showed that dominance effects were more important than additive effects for explaining the variations in PUE and its components.
Abstract
Phosphorus (P) deficiency is a major limiting factor for crop production in several countries. A better understanding of the genetic components of P use efficiency (PUE) is required to improve crop performance in low-P soils. To date, no QTLs (quantitative trait loci) were mapped for PUE using grain yield and other late phenotypic data in tropical conditions. Thus, we evaluated the genetic architecture of PUE in tropical maize (Zea mays L.) using multiple interval mapping for design III in a population of 140 RILs (recombinant inbred lines) backcrossed with both parental lines. The parental lines contrasted for yield and for PUE, a phenotypic index that was further decomposed into P acquisition efficiency (PAE) and P utilization efficiency. Our results showed that dominance effects were more important than additive effects for explaining the variations in PUE and its components. Approximately 80% of the QTLs mapped for PAE co-localized with those for PUE, indicating that the efficiency in acquiring P is the main determinant of PUE in tropical maize. Also, QTLs for PUE and PAE were located near to candidate genes previously associated with root development. Thus, we present important information to guide breeding strategies for the development of maize cultivars more adapted to P deficiency. F.F. Mendes, C.T. Guimaraes, L.J.M Guimarães, P.E.O. Guimarães, J.V. Magalhaes, and S.N. Parentoni, Embrapa Milho e Sorgo, CP 285, 35701970, Sete Lagoas, MG, Brazil; J.C. Souza, Dep. de Biologia, Univ. Federal de Lavras, CP 37, 37200-000, Lavras, MG, Brazil; A.A.F. Garcia, Dep. de Genética, Escola Superior de Agricultura Luiz de Queiroz, Univ. de São Paulo CP 83, 13400-970, Piracicaba, SP, Brazil. Received 14 Nov. 2013. *Corresponding author (claudia.guimaraes@embrapa.br). Abbreviations: GY, grain yield; LOD, logarithm of odds; MIM, multiple interval mapping; PAE, phosphorus acquisition efficiency; Psoil, phosphorus soil content; PUE, phosphorus use efficiency; PUTIL, phosphorus internal utilization efficiency; QTL, quantitative trait loci; RIL, recombinant inbred line; SDW, shoot dry weight. Published in Crop Sci. 54:1530–1538 (2014). doi: 10.2135/cropsci2013.11.0755 Freely available online through the author-supported open-access option. © Crop Science Society of America | 5585 Guilford Rd., Madison, WI 53711 USA All rights reserved. No part of this periodical may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or any information storage and retrieval system, without permission in writing from the publisher. Permission for printing and for reprinting the material contained herein has been obtained by the publisher. Published April 28, 2015

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Journal ArticleDOI

Options for Improved Phosphorus Cycling and Use in Agriculture at the Field and Regional Scales

TL;DR: A perspective on how agriculture has the potential to utilize plant and microbial traits to improve PUE at the field scale and accordingly, maintain crop yields at lower STP concentrations is provided.
Journal ArticleDOI

Root-Associated Microbiome of Maize Genotypes with Contrasting Phosphorus Use Efficiency

TL;DR: The results expand knowledge of which microbial groups are favored in P-deficient oxisol and suggest that P fertilization significantly impacts the species composition and diversity indices of bacteria and fungi communities, both inside the roots and in the rhizosphere.
Journal ArticleDOI

Mapping and cloning of quantitative trait loci for phosphorus efficiency in crops: opportunities and challenges

TL;DR: The QTL mapping of traits related to P efficiency which impact on shoot biomass or yield of crops in the past 20 years is described and a scheme to develop crop genotypes with improved P efficiency is proposed.
References
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A new look at the statistical model identification

TL;DR: In this article, a new estimate minimum information theoretical criterion estimate (MAICE) is introduced for the purpose of statistical identification, which is free from the ambiguities inherent in the application of conventional hypothesis testing procedure.
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Estimating the Dimension of a Model

TL;DR: In this paper, the problem of selecting one of a number of models of different dimensions is treated by finding its Bayes solution, and evaluating the leading terms of its asymptotic expansion.

Estimating the dimension of a model

TL;DR: In this paper, the problem of selecting one of a number of models of different dimensions is treated by finding its Bayes solution, and evaluating the leading terms of its asymptotic expansion.
Journal ArticleDOI

The estimation of map distances from recombination values.

TL;DR: The genetic map is a tool to quantify the distance between genes on a chromosome, based on the observed frequency of crossovers during cell division, which is used to estimate the total distance between chromosomes.
Journal ArticleDOI

Mapping mendelian factors underlying quantitative traits using rflp linkage maps

TL;DR: In this paper, a set of analytical methods that modify and extend the classical theory for mapping such quantitative trait loci (QTLs) are described, and explicit graphs are provided that allow experimental geneticists to estimate, in any particular case, the number of progeny required to map QTLs underlying a quantitative trait.
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