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Genetic constraints predict evolutionary divergence in Dalechampia blossoms.

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TLDR
This work uses recently developed measures of evolvability to test the genetic constraint hypothesis with quantitative genetic data on floral morphology from the Neotropical vine Dalechampia scandens, and finds clear evidence for genetic constraints, particularly among traits that were tightly phenotypically integrated.
Abstract
If genetic constraints are important, then rates and direction of evolution should be related to trait evolvability. Here we use recently developed measures of evolvability to test the genetic constraint hypothesis with quantitative genetic data on floral morphology from the Neotropical vine Dalechampia scandens (Euphorbiaceae). These measures were compared against rates of evolution and patterns of divergence among 24 populations in two species in the D. scandens species complex. We found clear evidence for genetic constraints, particularly among traits that were tightly phenotypically integrated. This relationship between evolvability and evolutionary divergence is puzzling, because the estimated evolvabilities seem too large to constitute real constraints. We suggest that this paradox can be explained by a combination of weak stabilizing selection around moving adaptive optima and small realized evolvabilities relative to the observed additive genetic variance.

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Comparative Analysis of Principal Components Can be Misleading

TL;DR: It is demonstrated precisely how using standard PCA can mislead inferences: the first few principal components of traits evolved under constant-rate multivariate Brownian motion will appear to have evolved via an "early burst" process.
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Integrated phenotypes: understanding trait covariation in plants and animals

TL;DR: It is suggested that care be invested in relating measurement to underlying theory or hypotheses, and that summative, theory-free descriptors of integration generally be avoided.
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Evolution of morphological allometry

TL;DR: Evidence is reviewed for and against the allometry‐as‐a‐constraint hypothesis, which suggests that allometries have low evolvability and could constrain phenotypic evolution by forcing evolving species along fixed trajectories.
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Mutation predicts 40 million years of fly wing evolution

TL;DR: The evidence for a strong relationship between mutation and divergence in a slowly evolving structure challenges the existing models of mutation in evolution.
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Floral specialization and angiosperm diversity: phenotypic divergence, fitness trade-offs and realized pollination accuracy

TL;DR: The role of flowers in the diversification and increased phenotypic disparity (phenotypic diversity) of angiosperms depends on the system as mentioned in this paper, and their capacity to have specialized functions, increase speciation rates or decrease extinction rates.
References
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Journal Article

R: A language and environment for statistical computing.

R Core Team
- 01 Jan 2014 - 
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
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The neighbor-joining method: a new method for reconstructing phylogenetic trees.

TL;DR: The neighbor-joining method and Sattath and Tversky's method are shown to be generally better than the other methods for reconstructing phylogenetic trees from evolutionary distance data.
Journal ArticleDOI

Regularization and variable selection via the elastic net

TL;DR: It is shown that the elastic net often outperforms the lasso, while enjoying a similar sparsity of representation, and an algorithm called LARS‐EN is proposed for computing elastic net regularization paths efficiently, much like algorithm LARS does for the lamba.
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Regularization Paths for Generalized Linear Models via Coordinate Descent

TL;DR: In comparative timings, the new algorithms are considerably faster than competing methods and can handle large problems and can also deal efficiently with sparse features.
Journal ArticleDOI

APE: Analyses of Phylogenetics and Evolution in R language

TL;DR: UNLABELLED Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics that provides both utility functions for reading and writing data and manipulating phylogenetic trees.
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