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Open AccessJournal ArticleDOI

Kinetics of Influenza A Virus Infection in Humans

TLDR
A series of mathematical models of increasing complexity, which incorporate target cell limitation and the innate interferon response, are utilized to examine influenza A virus kinetics in the upper respiratory tracts of experimentally infected adults to suggest that antiviral treatments have a large hurdle to overcome in moderating symptoms and limiting infectiousness.
Abstract
Currently, little is known about the viral kinetics of influenza A during infection within an individual. We utilize a series of mathematical models of increasing complexity, which incorporate target cell limitation and the innate interferon response, to examine influenza A virus kinetics in the upper respiratory tracts of experimentally infected adults. The models were fit to data from an experimental H1N1 influenza A/Hong Kong/123/77 infection and suggest that it is important to include the eclipse phase of the viral life cycle in viral dynamic models. Doing so, we estimate that after a delay of approximately 6 h, infected cells begin producing influenza virus and continue to do so for approximately 5 h. The average lifetime of infected cells is approximately 11 h, and the half-life of free infectious virus is approximately 3 h. We calculated the basic reproductive number, R(0), which indicated that a single infected cell could produce approximately 22 new productive infections. This suggests that antiviral treatments have a large hurdle to overcome in moderating symptoms and limiting infectiousness and that treatment has to be initiated as early as possible. For about 50% of patients, the curve of viral titer versus time has two peaks. This bimodal behavior can be explained by incorporating the antiviral effects of interferon into the model. Our model also compared well to an additional data set on viral titer after experimental infection and treatment with the neuraminidase inhibitor zanamivir, which suggests that such models may prove useful in estimating the efficacies of different antiviral therapies for influenza A infection.

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On Identifiability of Nonlinear ODE Models and Applications in Viral Dynamics

TL;DR: This article reviews identifiability analysis methodologies for nonlinear ODE models developed in the past one to two decades, including structural identifiable analysis, practical identIFiability analysis and sensitivity-based identifability analysis.
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Viral Loads and Duration of Viral Shedding in Adult Patients Hospitalized with Influenza

TL;DR: Patients hospitalized with severe influenza have more active and prolonged viral replication, whereas antivirals started within the first 4 days of illness enhance viral clearance.
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The evolution of seasonal influenza viruses

TL;DR: Recent advances in understanding the molecular determinants of influenza virus immune escape, sources of evolutionary selection pressure, population dynamics of influenza viruses and prospects for better influenza virus control are discussed.
Journal ArticleDOI

Antiviral Therapy and Outcomes of Influenza Requiring Hospitalization in Ontario, Canada

TL;DR: There is a significant burden of illness attributable to influenza in this highly vaccinated population of patients hospitalized with influenza in southern Ontario, Canada and treatment with antiviral drugs active against influenza was associated with a significant reduction in mortality.
Journal ArticleDOI

FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model

TL;DR: A new stochastic model of the spread of influenza across a large population is developed, which has realistic social contact networks, and transmission and infections are based on the current state of knowledge of the natural history of influenza.
References
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TL;DR: The bootstrap is extended to other measures of statistical accuracy such as bias and prediction error, and to complicated data structures such as time series, censored data, and regression models.
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Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection

TL;DR: Treatment of infected patients with ABT-538 causes plasma HIV-1 levels to decrease exponentially and CD4 lymphocyte counts to rise substantially, indicating that replication of HIV- 1 in vivo is continuous and highly productive, driving the rapid turnover ofCD4 lymphocytes.
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How cells respond to interferons

TL;DR: The Janus kinases and signal transducers and activators of transcription, and many of the interferon-induced proteins, play important alternative roles in cells, raising interesting questions as to how the responses to the interFERons intersect with more general aspects of cellular physiology and how the specificity of cytokine responses is maintained.
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Mortality Associated With Influenza and Respiratory Syncytial Virus in the United States

TL;DR: Mortality associated with both influenza and RSV circulation disproportionately affects elderly persons, and influenza deaths have increased substantially in the last 2 decades, in part because of aging of the population, highlighting the need for better prevention measures, including more effective vaccines and vaccination programs for elderly persons.
Journal ArticleDOI

HIV-1 Dynamics in Vivo: Virion Clearance Rate, Infected Cell Life-Span, and Viral Generation Time

TL;DR: A new mathematical model was used to analyze a detailed set of human immunodeficiency virus-type 1 (HIV-1) viral load data collected from five infected individuals after the administration of a potent inhibitor of HIV-1 protease, providing not only a kinetic picture ofAIDS pathogenesis, but also theoretical principles to guide the development of treatment strategies.
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