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Open AccessJournal ArticleDOI

Overlapping community detection in networks: The state-of-the-art and comparative study

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TLDR
A framework is proposed for evaluating algorithms' ability to detect overlapping nodes, which helps to assess overdetection and underdetection, and for low overlapping density networks, SLPA, OSLOM, Game, and COPRA offer better performance than the other tested algorithms.
Abstract
This article reviews the state-of-the-art in overlapping community detection algorithms, quality measures, and benchmarks. A thorough comparison of different algorithms (a total of fourteen) is provided. In addition to community-level evaluation, we propose a framework for evaluating algorithms' ability to detect overlapping nodes, which helps to assess overdetection and underdetection. After considering community-level detection performance measured by normalized mutual information, the Omega index, and node-level detection performance measured by F-score, we reached the following conclusions. For low overlapping density networks, SLPA, OSLOM, Game, and COPRA offer better performance than the other tested algorithms. For networks with high overlapping density and high overlapping diversity, both SLPA and Game provide relatively stable performance. However, test results also suggest that the detection in such networks is still not yet fully resolved. A common feature observed by various algorithms in real-world networks is the relatively small fraction of overlapping nodes (typically less than 30p), each of which belongs to only 2 or 3 communities.

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Citations
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Journal ArticleDOI

Defining and evaluating network communities based on ground-truth

TL;DR: In this article, the authors distinguish between structural and functional definitions of network communities and identify networks with explicitly labeled functional communities to which they refer as ground-truth communities, where nodes explicitly state their community memberships and use such social groups to define a reliable and robust notion of groundtruth communities.
Journal ArticleDOI

Community detection in networks: A user guide

TL;DR: In this paper, the authors present a guided tour of the main aspects of community detection in networks and point out strengths and weaknesses of popular methods, and give directions to their use.
Proceedings ArticleDOI

Overlapping community detection at scale: a nonnegative matrix factorization approach

TL;DR: This paper presents BIGCLAM (Cluster Affiliation Model for Big Networks), an overlapping community detection method that scales to large networks of millions of nodes and edges and builds on a novel observation that overlaps between communities are densely connected.
Proceedings Article

Community preserving network embedding

TL;DR: A novel Modularized Nonnegative Matrix Factorization (M-NMF) model is proposed to incorporate the community structure into network embedding and jointly optimize NMF based representation learning model and modularity based community detection model in a unified framework, which enables the learned representations of nodes to preserve both of the microscopic and community structures.
References
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Journal ArticleDOI

Community structure in social and biological networks

TL;DR: This article proposes a method for detecting communities, built around the idea of using centrality indices to find community boundaries, and tests it on computer-generated and real-world graphs whose community structure is already known and finds that the method detects this known structure with high sensitivity and reliability.
Journal ArticleDOI

WGCNA: an R package for weighted correlation network analysis.

TL;DR: The WGCNA R software package is a comprehensive collection of R functions for performing various aspects of weighted correlation network analysis that includes functions for network construction, module detection, gene selection, calculations of topological properties, data simulation, visualization, and interfacing with external software.
Journal ArticleDOI

Community detection in graphs

TL;DR: A thorough exposition of community structure, or clustering, is attempted, from the definition of the main elements of the problem, to the presentation of most methods developed, with a special focus on techniques designed by statistical physicists.
Journal ArticleDOI

Community detection in graphs

TL;DR: A thorough exposition of the main elements of the clustering problem can be found in this paper, with a special focus on techniques designed by statistical physicists, from the discussion of crucial issues like the significance of clustering and how methods should be tested and compared against each other, to the description of applications to real networks.
Journal ArticleDOI

Clustering by Passing Messages Between Data Points

TL;DR: A method called “affinity propagation,” which takes as input measures of similarity between pairs of data points, which found clusters with much lower error than other methods, and it did so in less than one-hundredth the amount of time.
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