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Practical Review on the Use of Synchrotron Based Micro- And Nano- X-ray Fluorescence Mapping and X-ray Absorption Spectroscopy to Investigate the Interactions Between Plants and Engineered Nanomaterials

TLDR
This review will focus on important methodological aspects regarding sample preparation, data acquisition and data analysis of SR-XFM/XAS to investigate interactions between plants and ENMs.
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This article is published in Plant Physiology and Biochemistry.The article was published on 2017-01-01 and is currently open access. It has received 115 citations till now.

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Uptake, translocation, and transformation of metal-based nanoparticles in plants: recent advances and methodological challenges

TL;DR: In this paper, a review summarizes recent research progress on the uptake, translocation and transformation of metal-based nanoparticles in higher plants, and the key physiological barriers to plant uptake of ENPs are proposed.
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Nanoparticle Size and Coating Chemistry Control Foliar Uptake Pathways, Translocation, and Leaf-to-Rhizosphere Transport in Wheat

TL;DR: This study used a combination of Au quantification and spatial analysis to investigate how size and coating chemistry of gold nanoparticles influence their interactions with plant leaves, uptake, translocation through the mesophyll to the vasculature, and transport to the rest of the plant.
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The imaging of failure in structural materials by synchrotron radiation X-ray microtomography

TL;DR: A review of the application of synchrotron radiation X-ray computed microtomography (SR-μCT) to the study of internal damage accumulation and evolution in structural materials including cast irons and steel, nickel superalloys, lightweight titanium and aluminum alloys as well as metallic, ceramic and polymer composite materials together with additatively manufactured or three-dimensional (3D) printed metallic materials can be found in this paper.
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Interaction of titanium dioxide nanoparticles with soil components and plants: current knowledge and future research needs – a critical review

TL;DR: In this article, a review of the current knowledge about factors affecting the interaction of nano-TiO2 with soil and plants is presented, including the role of particle size, crystal phase, surface coating, and techniques employed to study the interaction with plants.
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Impact of Surface Charge on Cerium Oxide Nanoparticle Uptake and Translocation by Wheat (Triticum aestivum)

TL;DR: It is suggested that NP coatings can be designed to target NPs to specific parts of plants, and Ce was found in clusters in the nonvascular leaf tissue of the CeO2(0) NP exposed plant.
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ATHENA, ARTEMIS, HEPHAESTUS: data analysis for X-ray absorption spectroscopy using IFEFFIT.

TL;DR: A software package for the analysis of X-ray absorption spectroscopy (XAS) data is presented, based on the IFEFFIT library of numerical and XAS algorithms and is written in the Perl programming language using the Perl/Tk graphics toolkit.
Journal ArticleDOI

Learning the parts of objects by non-negative matrix factorization

TL;DR: An algorithm for non-negative matrix factorization is demonstrated that is able to learn parts of faces and semantic features of text and is in contrast to other methods that learn holistic, not parts-based, representations.

Learning parts of objects by non-negative matrix factorization

D. D. Lee
TL;DR: In this article, non-negative matrix factorization is used to learn parts of faces and semantic features of text, which is in contrast to principal components analysis and vector quantization that learn holistic, not parts-based, representations.
Journal ArticleDOI

Nanoparticle Silver Released into Water from Commercially Available Sock Fabrics

TL;DR: Variable leaching rates among sock types suggests that the sock manufacturing process may control the release of silver, and physical separation and ion selective electrode (ISE) analyses suggest that both colloidal and ionic silver leach from the socks.
Journal ArticleDOI

A multiplatform code for the analysis of energy-dispersive X-ray fluorescence spectra

TL;DR: A user friendly program for X-ray fluorescence analysis has been developed at the European Synchrotron Radiation Facility as mentioned in this paper, which allows interactive as well as batch processing of large data sets.
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Frequently Asked Questions (12)
Q1. What contributions have the authors mentioned in the paper "Practical review on the use of synchrotron based micro- and nano- x-ray fluorescence mapping and x-ray absorption spectroscopy to investigate the interactions between plants and engineered nanomaterials" ?

Particularly, the partition of nanoparticles ( NPs ) to waste water treatment plant ( WWTP ) sludge represents a potential threat to agricultural ecosystems where these biosolids are being applied as fertilizers. This review will focus on important methodological aspects regarding sample preparation, data acquisition and data analysis of SR-XFM/ XAS to investigate interactions between plants and ENMs. Moreover, several applications of ENMs in agriculture and soil remediation are suggested. 

Multi-scale analyses are of high relevance and for this reason developments at present and future beamlines offering the possibility to perform micro and nano analysis at the same analytical platform on the same sample are envisioned. SR sources providing extremely brilliant beams will make possible to analyze higher num ber of samples in less time with enhanced detection limits and improved lateral resolution. However, it will require a continuous development of highly sensitive and fast detectors. In the near future, 2D speciation in XRF mode ( XANES mapping ) will likely become a standard acquisition strategy, providing more statistically meaningful data sets to entangle the delicate aspects of plant/ENMs interactions. 

Spatially resolved XAS is a very useful complement to SR-XFM since it allows determining the speciation of a chemical element at micro and nano-scale in a plant sample. 

Considering the analysis is performed in very small sample volumes (e.g. 1 μm2 beam illuminates 25–40 μm thick plant sample) SR-XFM can detect down to femtograms of the element of interest, depending on flux, detector efficiency, and matrix of the sample. 

Assuming density of plant tissue close to water, femtogram content of the element of interest would translate to ∼10–100 mg/kg local concentration in the tissue. 

Accumulation of ENMs in edible parts of crops, both from soil and foliar applications, could negatively impact human and livestock health (Hong et al., 2013; Rico et al., 2011). 

Quality assessment of the cryo-sections is important to avoid losing time removing and transferring another sample (particularly for in vacuum experiments this is time consuming). 

Due to their high surface area to volume ratios (>1% atoms at surface), they show different characteristics than the macro or micro sized materials such as high reactivity and conductivity. 

For frozen-hydrated samples, the cryo-microtome set-up needs to be optimized for each tissue type: chamber temperature (usually around −20 °C), sample cold finger and knife temperatures, type of knife (e.g. diamond, stainless steel, or tungsten), cutting velocity, and section thickness (Vogel-Mikuš et al., 2009). 

Dry ice shipping is a possible option for sample transportation, but a safer and optimal alternative is shipping samples in specialized liquid nitrogen vapor dewars that can preserve samples for several days and are authorized by air transport regulation. 

It is now significantly demonstrated that ultra-rapid cryofixation over chemical fixation is the preferred strategy for stabilizing biological material close to the in vivo state (Perrin et al., 2015). 

This option is of special interest in the study of NPs in plant samples, as they often contribute in a very low proportion to the sum XRF spectrum of the sample.