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Journal ArticleDOI

Proton Transfer of Guanine Radical Cations Studied by Time-Resolved Resonance Raman Spectroscopy Combined with Pulse Radiolysis

TLDR
The oxidation of guanine (G) is studied by using transient absorption and time-resolved resonance Raman spectroscopies combined with pulse radiolysis to demonstrate the pH dependence and the increase in the bonding order of pyrimidine (Pyr) and imidazole rings.
Abstract
The oxidation of guanine (G) is studied by using transient absorption and time-resolved resonance Raman spectroscopies combined with pulse radiolysis. The transient absorption spectral change demonstrates that the neutral radical of G (G•(−H+)), generated by the deprotonation of G radical cation (G•+), is rapidly converted to other G radical species. The formation of this species shows the pH dependence, suggesting that it is the G radical cation (G•+)′ formed from the protonation at the N7 of G•(−H+). On one hand, most Raman bands of (G•+)′ are up-shifted relative to those of G, indicating the increase in the bonding order of pyrimidine (Pyr) and imidazole rings. The (G•+)′ exhibits the characteristic CO stretching mode at ∼1266 cm–1 corresponding to a C–O single bond, indicating that the unpaired electron in (G•+)′ is localized on the oxygen of the Pyr ring.

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Direct Observation of the Hole Carriers in DNA Photoinduced Charge Transport.

TL;DR: The dynamics of each step in the charge separation and charge recombination process as well as the overall efficiency of charge separation have been determined, thus providing a complete account of the mechanism and dynamics of photoinduced charge transport in these DNA hairpins.
Journal ArticleDOI

Pulse Radiolysis Studies for Mechanism in Biochemical Redox Reactions

TL;DR: Pulse radiolysis is a powerful method for generating highly reduced or oxidized species and free radicals, and studies of the reactions between specific radicals and solutes, often revealing the mechanisms underlying the initial and subsequent reactions.
Journal ArticleDOI

Tracking Photoinduced Charge Separation in DNA: from Start to Finish.

TL;DR: Evidence is obtained based on femtosecond transient absorption spectroscopy for the formation of delocalized A-polarons in A-tracts possessing four or more A-T base pairs, used to track hole transport across less-common DNA structures.
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UV–Vis Action Spectroscopy of Guanine, 9-Methylguanine, and Guanosine Cation Radicals in the Gas Phase

TL;DR: Action spectroscopy allowed us to assign the canonical 6-oxo structure (rG1•+) to the gas-phase guanosine cation radicals that were formed as the lowest-energy tautomers.
References
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Journal ArticleDOI

Oxidative DNA damage: mechanisms, mutation, and disease

TL;DR: This review critically addresses the extent to which the in vitro significance of oxidative DNA damage has relevance for the pathogenesis of disease, drawing attention to the multiplicity of proteins with repair activities along with a number of poorly considered effects of damage.
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Reactions of oxyl radicals with DNA.

TL;DR: This review focuses on the damage caused to DNA by reactive oxygen-centred radicals, which arise either from the radiolysis of water by ionizing radiation, or from a purely chemical source.
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Free radical-induced damage to DNA: mechanisms and measurement.

TL;DR: Mechanistic aspects of oxidative damage to DNA and recent developments in the measurement of this type of damage using chromatographic and mass spectrometric techniques are reviewed.
Journal ArticleDOI

Theoretical Studies of GG-Specific Photocleavage of DNA via Electron Transfer: Significant Lowering of Ionization Potential and 5‘-Localization of HOMO of Stacked GG Bases in B-Form DNA

TL;DR: In this paper, molecular orbital calculations of stacked DNA bases were performed at 3-21G and 6-31G levels to elucidate the origin of the 5'-GG-3' sequence specificity for the photocleavage of DNA in the presence of electron-accepting photosensitizers.
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