Journal ArticleDOI
A method for designing primer sets for speciation studies in filamentous ascomycetes
Ignazio Carbone,Linda M. Kohn +1 more
TLDR
A simple method is described for designing primer sets that can amplify specific protein-encoding sequences in a wide variety of filamentous ascomycetes.Abstract:
A simple method is described for designing primer sets that can amplify specific protein-encoding sequences in a wide variety of filamentous ascomycetes. Using this technique, we successfully desig...read more
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The Colletotrichum gloeosporioides species complex
TL;DR: The limit of the Colletotrichum gloeosporioides species complex is defined genetically, based on a strongly supported clade within the Col letteredum ITS gene tree, as well as all taxa accepted within this clade, as it has been applied in the literature for the past 50 years.
Journal ArticleDOI
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
Richard J. O'Connell,Michael R. Thon,Stéphane Hacquard,Stefan G. Amyotte,Jochen Kleemann,Maria F. Torres,Ulrike Damm,Ester Alvarenga Santos Buiate,Lynn Epstein,Noam Alkan,Janine Altmüller,Lucia Alvarado-Balderrama,Christopher Bauser,Christian Becker,Bruce W. Birren,Zehua Chen,Jaeyoung Choi,Jo Anne Crouch,Jonathan P. Duvick,Jonathan P. Duvick,Mark A. Farman,Pamela Gan,David I. Heiman,Bernard Henrissat,Richard J. Howard,Mehdi Kabbage,Christian Koch,Barbara Kracher,Yasuyuki Kubo,Audrey D. Law,Marc-Henri Lebrun,Yong-Hwan Lee,Itay Miyara,Neil Moore,Ulla Neumann,Karl Nordström,Daniel G. Panaccione,Ralph Panstruga,Ralph Panstruga,Michael Place,Robert H. Proctor,Dov Prusky,Gabriel E. Rech,Richard Reinhardt,Jeffrey A. Rollins,Steve Rounsley,Christopher L. Schardl,David C. Schwartz,Narmada Shenoy,Ken Shirasu,Usha Rani Sikhakolli,Kurt Stüber,Serenella A. Sukno,James A. Sweigard,Yoshitaka Takano,Hiroyuki Takahara,Hiroyuki Takahara,Frances Trail,H. Charlotte van der Does,H. Charlotte van der Does,Lars M. Voll,Isa Will,Sarah Young,Qiandong Zeng,Jingze Zhang,Shiguo Zhou,Martin B. Dickman,Paul Schulze-Lefert,Emiel Ver Loren van Themaat,Li-Jun Ma,Li-Jun Ma,Lisa J. Vaillancourt +71 more
TL;DR: Findings show that preinvasion perception of plant-derived signals substantially reprograms fungal gene expression and indicate previously unknown functions for particular fungal cell types.
Journal ArticleDOI
Lessons from the Genome Sequence of Neurospora crassa: Tracing the Path from Genomic Blueprint to Multicellular Organism
Katherine A. Borkovich,Lisa A. Alex,Oded Yarden,Michael Freitag,Gloria E. Turner,Nick D. Read,Stephan Seiler,Deborah Bell-Pedersen,John V. Paietta,Nora Plesofsky,Michael Plamann,Marta Goodrich-Tanrikulu,Ulrich Schulte,Gertrud Mannhaupt,Frank E. Nargang,Alan Radford,Claude P. Selitrennikoff,James E. Galagan,Jay C. Dunlap,Jennifer J. Loros,David E. A. Catcheside,Hirokazu Inoue,Rodolfo Aramayo,Michael Polymenis,Eric U. Selker,Matthew S. Sachs,George A. Marzluf,Ian T. Paulsen,Rowland H. Davis,Daniel J. Ebbole,Alex Zelter,Eric R. Kalkman,Rebecca O’Rourke,Frederick J. Bowring,Jane Yeadon,Chizu Ishii,Keiichiro Suzuki,Wataru Sakai,Robert Pratt +38 more
TL;DR: An analysis of over 1,100 of the ∼10,000 predicted proteins encoded by the genome sequence of the filamentous fungus Neurospora crassa reveals potential new targets for antifungals as well as loci implicated in human and plant physiology and disease.
Journal ArticleDOI
The Colletotrichum acutatum species complex
TL;DR: Multilocus molecular phylogenetic analysis of 331 strains previously identified as C. acutatum and other related taxa, including strains from numerous hosts with wide geographic distributions, confirmed the molecular groups previously recognised and identified a series of novel taxa.
Journal ArticleDOI
The genus Cladosporium
TL;DR: A monographic revision of the hyphomycete genus Cladosporium s.
References
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Journal ArticleDOI
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Stephen F. Altschul,Thomas L. Madden,Alejandro A. Schäffer,Jinghui Zhang,Zheng Zhang,Webb Miller,David J. Lipman +6 more
TL;DR: A new criterion for triggering the extension of word hits, combined with a new heuristic for generating gapped alignments, yields a gapped BLAST program that runs at approximately three times the speed of the original.
Ainsworth and Bisby's Dictionary of the Fungi.
TL;DR: In this article, a dictionary of the Fungi has been proposed for the chromistan fungal analogues and a dictionary for the protozoan fungaes analogues.
Journal ArticleDOI
Multiple evolutionary origins of the fungus causing Panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies
TL;DR: Testing whether lineages of the Panama disease pathogen have a monophyletic origin by comparing DNA sequences of nuclear and mitochondrial genes indicates Panama disease of banana is caused by fungi with independent evolutionary origins.