Anshul Kundaje

TL;DR: This work develops a set of practical benchmark tasks relying on physical simulation of molecular systems mimicking real-life molecular design problems for materials, drugs, and chemical reactions, and demonstrates the utility and ease of use of the new benchmark set.

TL;DR: In this paper , the authors provided the first 3D histogram of the nucleomorph genome of the chlorarachniophyte Bigelowiella natans, showing that the B. natans nucleomorph chromosomes interact with one another at their telomeric regions and show the relative contact frequencies between the multiple genomic compartments of distinct origin.

TL;DR: In this paper, the gene label ZK337.2 (KLU-1, a C2H2 Zn-finger protein) was mis-transcribed to ZK377.2, a neuronal fate regulator.

TL;DR: In this article , the authors used a machine learning algorithm to detect such sequence features and unexpectedly discovered that this mode of toxicity is not limited to human repeat expansion disorders but has evolved countless times across the tree of life in the form of cationic antimicrobial and venom peptides.

TL;DR: In this article , the authors proposed a framework for visualization of high-resolution DNA sequence features such as transcription factor motifs, where motif instances in regulatory DNA sequences are visualized as BED-based annotation tracks, which highlight the genomic coordinates of motif instances but do not expose their specific sequences.