A
Anshul Kundaje
Researcher at Stanford University
Publications - 252
Citations - 43164
Anshul Kundaje is an academic researcher from Stanford University. The author has contributed to research in topics: Chromatin & Gene. The author has an hindex of 60, co-authored 203 publications receiving 32299 citations. Previous affiliations of Anshul Kundaje include Microsoft & Columbia University.
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Chromatin accessibility dynamics of neurogenic niche cells reveal a reversible decline in neural stem cell migration during aging
Robin W. Yeo,Olivia Zhou,Brian Zhong,Mahfuza Sharmin,Tyson Ruetz,Anshul Kundaje,Alexander R. Dunn,Anne Brunet +7 more
TL;DR: In this article, the authors profile the chromatin landscape of five different cell types freshly isolated from the subventricular zone neurogenic niche of young and old mice and find that quiescent and activated NSCs exhibit opposite migratory deficits during aging.
Posted ContentDOI
Probing the diabetes and colorectal cancer relationship using gene-environment interaction analyses
Niki Dimou,Andre E. Kim,Orlagh Flanagan,Neil Murphy,Virginia Díez-Obrero,Anna Shcherbina,Elom K. Aglago,Emmanouil Bouras,Peter J. Campbell,Graham Casey,Steven Gallinger,Stephen B. Gruber,Mark A. Jenkins,Yi-Kuei Lin,Victor Moreno,Edward N. Ruiz-Narvaez,Mariana C. Stern,Yu Tian,Kostas Tsilidis,Volker Arndt,Elizabeth L. Barry,James W. Baurley,Sonja I. Berndt,Stéphane Bézieau,Stephanie A. Bien,D. Timothy Bishop,Hermann Brenner,Arif Budiarto,Robert Carreras-Torres,Tjeng Wawan Cenggoro,Andrew T. Chan,Jenny Chang-Claude,Stephen J. Chanock,Xuechen Chen,David V. Conti,Christopher H. Dampier,Matthew Devall,David A. Drew,Jane C. Figueiredo,Graham G. Giles,Andrea Gsur,Tabitha A. Harrison,Akihisa Hidaka,Michael Hoffmeister,Jeroen R. Huyghe,Kristina M. Jordahl,Eric S. Kawaguchi,Temitope O. Keku,Susanna C. Larsson,Loic Le Marchand,Juan Pablo Lewinger,Li Xin Li,Bharuno Mahesworo,John Morrison,Polly A. Newcomb,Christina C. Newton,Mireia Obón-Santacana,Jennifer Ose,Rish K. Pai,J. D. Palmer,Nikos Papadimitriou,Bens Pardamean,Anita R. Peoples,Paul D.P. Pharoah,Elizabeth A. Platz,John D. Potter,Gad Rennert,Peter C. Scacheri,Robert E. Schoen,Catherine M. Tangen,Stephen N. Thibodeau,Duncan Thomas,Cornelia M. Ulrich,Caroline Y. Um,Fränzel J.B. Van Duijnhoven,Kala Visvanathan,Pavel Vodicka,Ludmila Vodickova,Emily White,Alicja Wolk,Michael O. Woods,Conghui Qu,Anshul Kundaje,Li Hsu,W. James Gauderman,Marc J. Gunter,Ulrike Peters +86 more
TL;DR: In this paper , the authors used data from three genetic consortia (CCFR, CORECT, GECCO) and undertook genome-wide gene-environment interaction analyses with colorectal cancer risk, including interaction tests of genetics(G)xdiabetes and joint testing of G xdiabetes, G-colorect cancer association and/or G-diabetes correlation (2,3degrees of freedom joint tests; d.f.).
Journal ArticleDOI
Automated sequence-based annotation and interpretation of the human genome
Anshul Kundaje,Wouter Meuleman +1 more
Journal ArticleDOI
Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network
Mathys Grapotte,Manu Saraswat,Chloé Bessière,Christophe Ménichelli,Jordan A. Ramilowski,Jessica Severin,Yoshihide Hayashizaki,Masayoshi Itoh,Michihira Tagami,Mitsuyoshi Murata,Miki Kojima-Ishiyama,Shohei Noma,Akira Hasegawa,Hiromi Nishiyori-Sueki,Martin C. Frith,Imad Abugessaisa,Stuart Aitken,Bronwen Aken,Intikhab Alam,Tanvir E. Alam,Rami Alasiri,Ahmad M. N. Alhendi,Hamid Alinejad-Rokny,Mariano J. Alvarez,Robin Andersson,Takahiro Arakawa,Marito Araki,Taly Arbel,John Archer,Alan Archibald,Erik Arner,Peter Arner,Kiyoshi Asai,Haitham Ashoor,Gaby Astrom,Magda Babina,Jem Baillie,Vladimir B. Bajic,Archana Bajpai,Sarah Baker,Richard M. Baldarelli,Adam Balic,Mukesh Bansal,Arsen O. Batagov,Serafim Batzoglou,Anthony G Beckhouse,Antonio Paolo Beltrami,Carlo Alberto Beltrami,Nicolas Bertin,Sharmodeep Bhattacharya,Peter J. Bickel,Judith A. Blake,Mathieu Blanchette,Beatrice Bodega,Alessandro Bonetti,Hidemasa Bono,Jette Bornholdt,Michael Bttcher,Salim Bougouffa,Mette Boyd,Jeremie Breda,Frank Brombacher,James B. Brown,Carol J. Bult,A. M. Burroughs,David W. Burt,Annika Busch,Giulia Caglio,Andrea Califano,Christopher J. F. Cameron,Carlo Vittorio Cannistraci,Alessandra Carbone,Ailsa J Carlisle,P. Carninci,Kim W. Carter,Daniela Cesselli,Jen-Chien Chang,Julie Chen,Yun Chen,Marco Chierici,John Christodoulou,Yari Ciani,Emily L. Clark,Mehmet Kamil Coşkun,Maria Dalby,Emiliano Dalla,Carsten O. Daub,Carrie A. Davis,Michiel J. L. de Hoon,Derek De Rie,Elena Denisenko,Bart Deplancke,Michael Detmar,Ruslan Deviatiiarov,Diego di Bernardo,Alexander D. Diehl,Lothar C. Dieterich,Emmanuel Dimont,Sarah Djebali,Taeko Dohi,Josée Dostie,Finn Drabløs,Albert S.B. Edge,Matthias Edinger,Anna Ehrlund,Karl Ekwall,Arne Elofsson,Mitsuhiro Endoh,H. Enomoto,S. Enomoto,Mohammad Ali Faghihi,Michela Fagiolini,Mary C. Farach-Carson,Geoffrey Faulkner,A. M. Favorov,Ana Miguel Fernandes,Carmelo Ferrai,Alistair R. R. Forrest,L. M. Forrester,Mattias Forsberg,Alexandre Fort,Margherita Francescatto,Tom C. Freeman,Shinji Fukuda,Manabu Funayama,C. Furlanello,Masaaki Furuno,Chikara Furusawa,Hui Gao,Iveta Gazova,Claudia Gebhard,Florian Geier,Teunis B.H. Geijtenbeek,Samik Ghosh,Yanal Ghosheh,Thomas R. Gingeras,Takashi Gojobori,Tatyana Goldberg,Dan Goldowitz,Julian Gough,Dario Greco,Andreas Gruber,Sven Guhl,Roderic Guigó,Reto Guler,O. B. Gusev,Stefano Gustincich,Thomas J. Ha,Vanja Haberle,Paul Hale,Bjrn M. Hallstrom,M. Hamada,Lusy Handoko,Mitsuko Hara,Matthias Harbers,Jennifer Harrow,Jayson Harshbarger,Takeshi Hase,Kosuke Hashimoto,Taku Hatano,Nobutaka Hattori,Ryuhei Hayashi,Meenhard Herlyn,Peter Heutink,Win Hide,Kelly J Hitchens,Shannon Ho Sui,Peter A. C. ’t Hoen,Chung-Chau Hon,Fumikazu Hori,Masafumi Horie,Katsuhisa Horimoto,Paul Horton,Rui Hou,Edward Xiao-Ming Huang,Yi Huang,Richard Hugues,David Ross-Turner Hume,Hans-Ioan Ienasescu,Kei Iida,Tomokatsu Ikawa,Toshimichi Ikemura,Kazuho Ikeo,Norihiko Inoue,Yuri Ishizu,Yosuke Ito,Anna V. Ivshina,Boris R. Jankovic,Piroon Jenjaroenpun,Rory Johnson,Mette Jørgensen,Hadi Jorjani,Anagha M. Joshi,G. Jurman,Bogumil Kaczkowski,Chieko Kai,Kaoru Kaida,Kazuhiro Kajiyama,Rajaram Kaliyaperumal,Eli Kaminuma,Takashi Kanaya,Hiroshi Kaneda,Philipp Kapranov,Artem S. Kasianov,Takeya Kasukawa,Toshiaki Katayama,Sachi Kato,Shuji Kawaguchi,Jun Kawai,Hideya Kawaji,T. Kawamoto,Yuki I. Kawamura,Satoshi Kawasaki,Tsugumi Kawashima,Judith S. Kempfle,Tony J. Kenna,Juha Kere,Levon M. Khachigian,Hisanori Kiryu,Mami Kishima,Hiroyuki Kitajima,Toshio Kitamura,Hiroaki Kitano,Enio Klaric,Kjetil Klepper,S. Peter Klinken,Edda Kloppmann,Alan J. Knox,Yuichi Kodama,Yasushi Kogo,Miki Kojima,Soichi Kojima,Norio Komatsu,Hiromitsu Komiyama,Tsukasa Kono,Haruhiko Koseki,Shigeo Koyasu,Anton Kratz,Alexander Kukalev,Ivan V. Kulakovskiy,Anshul Kundaje,Hiroshi Kunikata,Richard Kuo,Tony Kuo,Shigehiro Kuraku,Vladimir A. Kuznetsov,Tae Jun Kwon,Matt Larouche,Timo Lassmann,Andy Law,Kim Anh Le-Cao,Charles-Henri Lecellier,Weonju Lee,Boris Lenhard,Andreas Lennartsson,Kang Li,Ruohan Li,Berit Lilje,Leonard Lipovich,Marina Lizio,Gonzalo Lopez,Shigeyuki Magi,Gloria Mak,Vsevolod J. Makeev,Riichiroh Manabe,Michiko Mandai,Jessica C. Mar,Kazuichi Maruyama,Taeko Maruyama,Elizabeth A. Mason,Anthony Mathelier,Hideo Matsuda,Yulia A. Medvedeva,Terrence F. Meehan,Niklas Mejhert,Alison M. Meynert,Norihisa Mikami,Aki Minoda,Hisashi Miura,Yohei Miyagi,Atsushi Miyawaki,Yosuke Mizuno,Hiromasa Morikawa,Mitsuru Morimoto,Masaki Morioka,Soji Morishita,Kazuyo Moro,Efthymios Motakis,Hozumi Motohashi,Abdul Kadir Mukarram,Christine L. Mummery,Christopher J. Mungall,Yasuhiro Murakawa,Masami Muramatsu,Kazunori Nagasaka,Takahide Nagase,Yutaka Nakachi,Fumio Nakahara,Kenta Nakai,Kumi Nakamura,Yasukazu Nakamura,Yukio Nakamura,Toru Nakazawa,Guy P. Nason,Chirag Nepal,Quan Nguyen,Lars K. Nielsen,Kohji Nishida,Koji M. Nishiguchi,Hiromi Nishiyori,Kazuhiro Nitta,Shuhei Noguchi,Cedric Notredame,Soichi Ogishima,Naganari Ohkura,Hiroshi Ohno,Mitsuhiro Ohshima,Takashi Ohtsu,Yukinori Okada,Mariko Okada-Hatakeyama,Yasushi Okazaki,Per Oksvold,Valerio Orlando,Ghim Sion Ow,Mumin Ozturk,Mikhail Pachkov,Triantafyllos Paparountas,Suraj P. Parihar,Sung Joon Park,Giovanni Pascarella,Robert Passier,Helena Persson,Ingrid H.C.H.M. Philippens,Silvano Piazza,Charles Plessy,Ana Pombo,Fredrik Pontén,Stéphane Poulain,Thomas Martin Poulsen,Swati Pradhan,Carolina Prezioso,Clare Pridans,Xiang-Yang Qin,J. Quackenbush,Owen J. L. Rackham,Timothy Ravasi,Michael Rehli,Sarah Rennie,Tiago Rito,Patrizia Rizzu,Christelle Robert,Marco Roos,Burkhard Rost,Filip Roudnicky,Riti Roy,Morten Beck Rye,Oxana Sachenkova,P. Saetrom,H. Sai,Shinji Saiki,Mitsue Saito,Akira Saito,Shimon Sakaguchi,Mizuho Sakai,Saori Sakaue,Asako Sakaue-Sawano,Albin Sandelin,Hiromi Sano,Yuzuru Sasamoto,Hiroki Sato,Alka Saxena,Hideyuki Saya,Andrea Schafferhans,Sebastian Schmeier,Christian Schmidl,Daniel Schmocker,Claudio Schneider,Mark Schueler,Erik Anthony Schultes,Gundula Schulze-Tanzil,Colin A. Semple,Shigeto Seno,Wooseok Seo,Jun Sese,Guojun Sheng,Jiantao Shi,Yishai Shimoni,Jay W. Shin,Javier SimónSánchez,Åsa Sivertsson,E. Sjostedt,Cilla Soderhall,Georges St. Laurent,Marcus H. Stoiber,Daisuke Sugiyama,Kim M. Summers,Ana Maria Suzuki,Harukazu Suzuki,Kenji Suzuki,Mikiko Suzuki,Naoko Suzuki,Takahiro Suzuki,Douglas J. Swanson,Rolf Swoboda,Ayumi Taguchi,Hazuki Takahashi,Masayo Takahashi,Kazuya Takamochi,Satoru Takeda,Yoichi Takenaka,Kin Tung Tam,Hiroshi Tanaka,Ricardo Takao Tanaka,Yuji Tanaka,Dave Tang,Ichiro Taniuchi,Andreas Tanzer,Hiroshi Tarui,Martin S. Taylor,Aika Terada,Yasuhisa Terao,Alison C. Testa,Mark G. Thomas,Supat Thongjuea,Kentaro Tomii,Elena Torlai Triglia,Hiroo Toyoda,Hiu-Gwen Tsang,Motokazu Tsujikawa,Mathias Uhlén,Eivind Valen,Marc van de Wetering,Erik van Nimwegen,Dmitry Velmeshev,Roberto Verardo,Morana Vitezic,Kristoffer Vitting-Seerup,Kalle von Feilitzen,Christian R. Voolstra,Ilya E. Vorontsov,Claes Wahlestedt,Kazuhide Watanabe,Shoko Watanabe,Christine A. Wells,Louise N. Winteringham,Ernst J. Wolvetang,Haruka Yabukami,Ken Yagi,Takuji Yamada,Yoko Yamaguchi,Masaki Yamamoto,Yasutomo Yamamoto,Y. Yamamoto,Yasunari Yamanaka,Kojiro Yano,Kayoko Yasuzawa,Yukiko Yatsuka,Masahiro Yo,Shunji Yokokura,Misako Yoneda,Emiko Yoshida,Yuki Yoshida,Masahito Yoshihara,Rachel Young,Robert Young,Nancy Yiu-Lin Yu,Noriko Yumoto,Susan E. Zabierowski,Peter G. Zhang,Silvia Zucchelli,Martin Zwahlen,Clément Chatelain,Piero Carninci,Wyeth W. Wasserman,Laurent Brehelin +474 more