A
Atsushi Niida
Researcher at University of Tokyo
Publications - 73
Citations - 4075
Atsushi Niida is an academic researcher from University of Tokyo. The author has contributed to research in topics: Cancer & Gene expression profiling. The author has an hindex of 21, co-authored 71 publications receiving 3256 citations.
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Journal ArticleDOI
Integrated molecular analysis of clear-cell renal cell carcinoma.
Yusuke Sato,Tetsuichi Yoshizato,Yuichi Shiraishi,Shigekatsu Maekawa,Yusuke Okuno,Takumi Kamura,Teppei Shimamura,Aiko Sato-Otsubo,Genta Nagae,Hiromichi Suzuki,Yasunobu Nagata,Kenichi Yoshida,Ayana Kon,Yutaka Suzuki,Kenichi Chiba,Hiroko Tanaka,Atsushi Niida,Akihiro Fujimoto,Tatsuhiko Tsunoda,Teppei Morikawa,Daichi Maeda,Haruki Kume,Sumio Sugano,Masashi Fukayama,Hiroyuki Aburatani,Masashi Sanada,Masashi Sanada,Satoru Miyano,Yukio Homma,Seishi Ogawa,Seishi Ogawa +30 more
TL;DR: This integrated molecular analysis of clear-cell renal cell carcinoma unmasked new correlations between DNA methylation, gene mutation and/or gene expression and copy number profiles, enabling the stratification of clinical risks for patients with ccRCC.
Journal ArticleDOI
Mutational landscape and clonal architecture in grade II and III gliomas
Hiromichi Suzuki,Kosuke Aoki,Kenichi Chiba,Yusuke Sato,Yusuke Shiozawa,Yuichi Shiraishi,Teppei Shimamura,Atsushi Niida,Kazuya Motomura,Fumiharu Ohka,Takashi Yamamoto,Kuniaki Tanahashi,Melissa Ranjit,Toshihiko Wakabayashi,Tetsuichi Yoshizato,Keisuke Kataoka,Kenichi Yoshida,Yasunobu Nagata,Aiko Sato-Otsubo,Hiroko Tanaka,Masashi Sanada,Yutaka Kondo,Hideo Nakamura,Masahiro Mizoguchi,Tatsuya Abe,Yoshihiro Muragaki,Reiko Watanabe,Ichiro Ito,Satoru Miyano,Atsushi Natsume,Seishi Ogawa +30 more
TL;DR: In this article, the authors delineate the entire picture of genetic alterations and affected pathways in these glioma types, with sensitive detection of driver genes Grade II and III gliomas comprise three distinct subtypes characterized by discrete sets of mutations and distinct clinical behaviors, suggesting that there is functional interplay between the mutations that drive clonal selection.
Journal ArticleDOI
DKK1, a negative regulator of Wnt signaling, is a target of the beta-catenin/TCF pathway.
Atsushi Niida,Takatoshi Hiroko,Mana Kasai,Yoichi Furukawa,Yusuke Nakamura,Yutaka Suzuki,Sumio Sugano,Tetsu Akiyama +7 more
TL;DR: A novel TCF target gene, DKK1, is identified, which has been shown to be a potent inhibitor of Wnt signaling, and the finding suggests the existence of a novel feedback loop in Wnt signalling.
Journal ArticleDOI
Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population
Genta Sawada,Genta Sawada,Atsushi Niida,Ryutaro Uchi,Hidenari Hirata,Teppei Shimamura,Yutaka Suzuki,Yuichi Shiraishi,Kenichi Chiba,Seiya Imoto,Yusuke Takahashi,Yusuke Takahashi,Takeshi Iwaya,Tomoya Sudo,Tomoatsu Hayashi,Hiroki Takai,Yoshihiro Kawasaki,Takashi Matsukawa,Hidetoshi Eguchi,Keishi Sugimachi,Fumiaki Tanaka,Hiromichi Suzuki,Ken Yamamoto,Hideshi Ishii,Makiko Shimizu,Hiroshi Yamazaki,Makoto Yamazaki,Yuji Tachimori,Yoshiaki Kajiyama,Shoji Natsugoe,Hiromasa Fujita,Ken-ichi Mafune,Yoichi Tanaka,David P. Kelsell,Claire A. Scott,Shoji Tsuji,Shinichi Yachida,Tatsuhiro Shibata,Sumio Sugano,Yuichiro Doki,Tetsu Akiyama,Hiroyuki Aburatani,Seishi Ogawa,Satoru Miyano,Masaki Mori,Koshi Mimori +45 more
TL;DR: A large-scale genomic analysis of ESCCs from patients in Japan determined the mutational landscape of this cancer and associated environmental and genetic factors with base substitution patterns of somatic mutations and provide a registry of genes and pathways that are disrupted in ES CCs.
Journal ArticleDOI
USAG-1: a bone morphogenetic protein antagonist abundantly expressed in the kidney.
Motoko Yanagita,Masako Oka,Tetsuro Watabe,Haruhisa Iguchi,Atsushi Niida,Satoru Takahashi,Tetsu Akiyama,Kohei Miyazono,Kohei Miyazono,Masashi Yanagisawa,Takeshi Sakurai +10 more
TL;DR: USAG-1 is shown to be a BMP antagonist that interacts with BMP-7 in the developing and adult kidney, and is suggested to be important in the development of kidney and preservation of adult renal functions under pathological stresses.