B
Brian Stevenson
Researcher at Swiss Institute of Bioinformatics
Publications - 202
Citations - 12628
Brian Stevenson is an academic researcher from Swiss Institute of Bioinformatics. The author has contributed to research in topics: Borrelia burgdorferi & Gene. The author has an hindex of 58, co-authored 180 publications receiving 10839 citations. Previous affiliations of Brian Stevenson include Ludwig Institute for Cancer Research & Rocky Mountain Laboratories.
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Journal ArticleDOI
A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi.
Sherwood R. Casjens,Nanette Palmer,René Van Vugt,Wai Mun Huang,Brian Stevenson,Patricia A. Rosa,Raju Lathigra,Granger G. Sutton,Jeremy Peterson,Robert J. Dodson,Daniel H. Haft,Erin Hickey,Michelle L. Gwinn,Owen White,Claire M. Fraser +14 more
TL;DR: It is determined that Borrelia burgdorferi strain B31 MI carries 21 extrachromosomal DNA elements, the largest number known for any bacterium, and the nucleotide sequence of three linear and seven circular plasmids in this infectious isolate is reported.
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Of ticks, mice and men: understanding the dual-host lifestyle of Lyme disease spirochaetes
TL;DR: This Review integrates a large body of information on the phylogenetic diversity, molecular biology, genetics and host interactions of B. burgdorferi into a cohesive picture of the molecular and cellular events that transpire as Lyme disease spirochaetes transit between their arthropod and vertebrate hosts during the enzootic cycle.
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Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma
Sergey Nikolaev,Donata Rimoldi,Christian Iseli,Christian Iseli,Armand Valsesia,Armand Valsesia,Armand Valsesia,Daniel Robyr,Corinne Gehrig,Keith Harshman,Michel Guipponi,Olesya Bukach,Vincent Zoete,Olivier Michielin,Olivier Michielin,Olivier Michielin,Katja Muehlethaler,Daniel E. Speiser,Jacques S. Beckmann,Jacques S. Beckmann,Ioannis Xenarios,Thanos D. Halazonetis,C. Victor Jongeneel,Brian Stevenson,Brian Stevenson,Stylianos E. Antonarakis +25 more
TL;DR: Exome sequencing detected somatic mutations in protein-coding regions in seven melanoma cell lines and donor-matched germline cells, which showed the hallmark of UV-induced DNA repair, but such a hallmark was absent in tumor sample–specific mutations in two metastases derived from the same individual.
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Temperature-related differential expression of antigens in the Lyme disease spirochete, Borrelia burgdorferi.
TL;DR: Immunoblotting of bacterial lysates with sera from infected mice indicated that the levels of several additional antigens were also increased in bacterial cultures shifted to 35 degrees C; one antigen was identified as OspE, which has been proposed to be coexpressed in an operon with the gene encoding OSpE.
Journal ArticleDOI
Genome-wide analysis of cancer/testis gene expression
Oliver Hofmann,Oliver Hofmann,Otavia L. Caballero,Brian Stevenson,Brian Stevenson,Yao-Tseng Chen,Tzeela Cohen,Ramon Chua,Christopher G. Maher,Sumir Panji,Ulf Schaefer,Adele Kruger,Minna Lehvaslaiho,Piero Carninci,Yoshihide Hayashizaki,C. Victor Jongeneel,C. Victor Jongeneel,Andrew J. G. Simpson,Lloyd J. Old,Winston Hide,Winston Hide +20 more
TL;DR: A comprehensive genome-wide survey of expression for a set of 153 previously described cancer/Testis CT genes in normal and cancer expression libraries finds that although they are generally highly expressed in testis, these genes exhibit heterogeneous gene expression profiles, allowing their classification into testis- restricted, testis/brain-restricted, and a testi-selective group of genes that show additional expression in somatic tissues.