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Keith Harshman
Researcher at University of Lausanne
Publications - 33
Citations - 3043
Keith Harshman is an academic researcher from University of Lausanne. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 23, co-authored 33 publications receiving 2605 citations.
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Journal ArticleDOI
Gene expression across mammalian organ development
Margarida Cardoso-Moreira,Margarida Cardoso-Moreira,Jean Halbert,Delphine Valloton,Britta Velten,C. T. Chen,Yi Shao,Angélica Liechti,Kelly Ascencao,Coralie Rummel,Svetlana Ovchinnikova,Pavel V. Mazin,Pavel V. Mazin,Ioannis Xenarios,Keith Harshman,Matthew Mort,David Neil Cooper,Carmen Sandi,Michael J. Soares,Michael J. Soares,Paula G. Ferreira,Sandra Afonso,Miguel Carneiro,James M. A. Turner,John L. VandeBerg,Amir Fallahshahroudi,Per Jensen,R. Behr,Steven Lisgo,Susan Lindsay,Philipp Khaitovich,Philipp Khaitovich,Philipp Khaitovich,Wolfgang Huber,Julie C. Baker,Simon Anders,Yong Zhang,Henrik Kaessmann +37 more
TL;DR: It is found that the breadth of gene expression and the extent of purifying selection gradually decrease during development, whereas the amount of positive selection and expression of new genes increase during development.
Journal ArticleDOI
Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma
Sergey Nikolaev,Donata Rimoldi,Christian Iseli,Christian Iseli,Armand Valsesia,Armand Valsesia,Armand Valsesia,Daniel Robyr,Corinne Gehrig,Keith Harshman,Michel Guipponi,Olesya Bukach,Vincent Zoete,Olivier Michielin,Olivier Michielin,Olivier Michielin,Katja Muehlethaler,Daniel E. Speiser,Jacques S. Beckmann,Jacques S. Beckmann,Ioannis Xenarios,Thanos D. Halazonetis,C. Victor Jongeneel,Brian Stevenson,Brian Stevenson,Stylianos E. Antonarakis +25 more
TL;DR: Exome sequencing detected somatic mutations in protein-coding regions in seven melanoma cell lines and donor-matched germline cells, which showed the hallmark of UV-induced DNA repair, but such a hallmark was absent in tumor sample–specific mutations in two metastases derived from the same individual.
Journal ArticleDOI
The genome of the fire ant Solenopsis invicta
Yannick Wurm,John Wang,Oksana Riba-Grognuz,Miguel Corona,Sanne Nygaard,Brendan G. Hunt,Krista K. Ingram,Laurent Falquet,Mingkwan Nipitwattanaphon,Dietrich Gotzek,Michiel B. Dijkstra,Jan Oettler,Fabien Comtesse,Cheng-Jen Shih,Wen-Jer Wu,Chin-Cheng Yang,Jérôme Thomas,Emmanuel Beaudoing,Sylvain Pradervand,Volker Flegel,Erin D. Cook,Roberto Fabbretti,Heinz Stockinger,Li Long,William G. Farmerie,Jane Oakey,Jacobus J. Boomsma,Pekka Pamilo,Soojin V. Yi,Jürgen Heinze,Michael A. D. Goodisman,Laurent Farinelli,Keith Harshman,Nicolas Hulo,Lorenzo Cerutti,Ioannis Xenarios,DeWayne Shoemaker,Laurent Keller +37 more
TL;DR: A phylogenetic analysis revealed that an ancestral vitellogenin gene first underwent a duplication that was followed by possibly independent duplications of each of the daughter viteLLogenins, possibly reflecting differential selection acting on the queen and worker castes.
Journal ArticleDOI
Comparative genomic and phylogeographic analysis of Mycobacterium leprae
Marc Monot,Nadine Honoré,Thierry Garnier,Nora Zidane,Diana Sherafi,Alberto Paniz-Mondolfi,Masanori Matsuoka,G. Michael Taylor,Helen D. Donoghue,Abi Bouwman,Simon Mays,C.L. Watson,Diana N. J. Lockwood,Ali Khamispour,Yahya Dowlati,Shen Jianping,Thomas H. Rea,Lucio Vera-Cabrera,Mariane Martins de Araújo Stefani,Sayera Banu,Murdo Macdonald,Bishwa Raj Sapkota,John S. Spencer,Jérôme Thomas,Keith Harshman,Pushpendra Singh,Philippe Busso,Alexandre Gattiker,Jacques Rougemont,Patrick J. Brennan,Stewart T. Cole +30 more
TL;DR: Sixteen interrelated SNP subtypes were defined by genotyping both extant and extinct strains of M. leprae from around the world and showed a strong geographical association that reflects the migration patterns of early humans and trade routes, with the Silk Road linking Europe to China having contributed to the spread of leprosy.
Journal ArticleDOI
Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.
Gwendal Le Martelot,Donatella Canella,Laura Symul,Eugenia Migliavacca,Federica Gilardi,Robin Liechti,Olivier Martin,Keith Harshman,Mauro Delorenzi,Béatrice Desvergne,Winship Herr,Bart Deplancke,Ueli Schibler,Jacques Rougemont,Nicolas Guex,Nouria Hernandez,Felix Naef +16 more
TL;DR: Genome-wide rhythms in RNA polymerase II loading and dynamic chromatin remodeling underlie periodic gene expression during diurnal cycles in the mouse liver.