C
Carmen Scheuner
Researcher at Leibniz Association
Publications - 19
Citations - 1451
Carmen Scheuner is an academic researcher from Leibniz Association. The author has contributed to research in topics: Genome & Roseobacter. The author has an hindex of 14, co-authored 19 publications receiving 1166 citations. Previous affiliations of Carmen Scheuner include DSM & Deutsche Sammlung von Mikroorganismen und Zellkulturen.
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Journal ArticleDOI
Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy.
Jan P. Meier-Kolthoff,Richard L. Hahnke,Jörn Petersen,Carmen Scheuner,Victoria Michael,Anne Fiebig,Christine Rohde,Manfred Rohde,Berthold Fartmann,Lynne Goodwin,Olga Chertkov,T. B. K. Reddy,Amrita Pati,Natalia Ivanova,Victor Markowitz,Nikos C. Kyrpides,Nikos C. Kyrpides,Tanja Woyke,Markus Göker,Hans-Peter Klenk +19 more
TL;DR: Analyses of the genome sequences of a large number of E. coli strains and of strains from > 100 other bacterial genera indicate a value of 79-80% dDDH as the most promising threshold for delineating subspecies, which in turn suggests the presence of five subspecies withinE.
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Comparative genomics of biotechnologically important yeasts
Robert Riley,Sajeet Haridas,Kenneth H. Wolfe,Mariana R. Lopes,Chris Todd Hittinger,Markus Göker,Asaf Salamov,Jennifer H. Wisecaver,Tanya M Long,Christopher H. Calvey,Andrea Aerts,Kerrie Barry,Cindy Choi,Alicia Clum,Aisling Y. Coughlan,Shweta Deshpande,Alexander P Douglass,Sara J Hanson,Hans-Peter Klenk,Kurt LaButti,Alla Lapidus,Erika Lindquist,Anna Lipzen,Jan P. Meier-Kolthoff,Robin A. Ohm,Robert Otillar,Jasmyn Pangilinan,Yi Peng,Antonis Rokas,Carlos A. Rosa,Carmen Scheuner,Andriy A. Sibirny,Jason C. Slot,J. Benjamin Stielow,Hui Sun,Cletus P. Kurtzman,Meredith Blackwell,Igor V. Grigoriev,Thomas W. Jeffries +38 more
TL;DR: The comparative genome analysis of 29 taxonomically and biotechnologically important yeasts, including 16 newly sequenced, enables correlation of genes to useful metabolic properties and showed the synteny of the mating-type locus to be conserved over a billion years of evolution.
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Phylogenomics of Rhodobacteraceae reveals evolutionary adaptation to marine and non-marine habitats
Meinhard Simon,Carmen Scheuner,Jan P. Meier-Kolthoff,Thorsten Brinkhoff,Irene Wagner-Döbler,Marcus Ulbrich,Hans-Peter Klenk,Dietmar Schomburg,Jörn Petersen,Markus Göker +9 more
TL;DR: The analyses, providing no unequivocal evidence for the monophyly of roseobacters, indicate several shifts between marine and non-marine habitats that occurred independently and were accompanied by characteristic changes in genomic content of orthologs, enzymes and metabolic pathways.
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A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data
TL;DR: It is demonstrated that a reliable allocation of members of the oligotrophic marine gammaproteobacteria group and related species to higher taxonomic ranks is possible by phylogenetic analyses of whole proteomes but also of the RNA polymerase beta subunit, whereas phylogenetic reconstructions based on 16S rRNA genes alone resulted in unstable tree topologies with only insignificant bootstrap support.
Journal ArticleDOI
Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes
Iain Anderson,Carmen Scheuner,Markus Göker,Kostas Mavromatis,Sean D. Hooper,Iris Porat,Hans-Peter Klenk,Natalia Ivanova,Nikos C. Kyrpides +8 more
TL;DR: These new genomes expand the understanding of haloarchaeal catabolic pathways, providing a basis for further experimental analysis, especially with regard to carbohydrate metabolism.