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Chao Liu
Researcher at North China University of Science and Technology
Publications - 14
Citations - 1179
Chao Liu is an academic researcher from North China University of Science and Technology. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 5, co-authored 8 publications receiving 1006 citations. Previous affiliations of Chao Liu include Nankai University.
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Journal ArticleDOI
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
Ray Ming,Shaobin Hou,Yun Feng,Qingyi Yu,Alexandre Dionne-Laporte,Jimmy H. Saw,Pavel Senin,Wei Wang,Benjamin V. Ly,Kanako L. T. Lewis,Steven L. Salzberg,Lu Feng,Matthew Jones,Rachel L. Skelton,Jan E. Murray,Cuixia Chen,Wubin Qian,Junguo Shen,Peng Du,Moriah Eustice,Eric J. Tong,Haibao Tang,Eric Lyons,Robert E. Paull,Todd P. Michael,Kerr Wall,Danny W. Rice,Henrik H. Albert,Ming Li Wang,Yun J. Zhu,Michael C. Schatz,Niranjan Nagarajan,Ricelle A. Acob,Peizhu Guan,Andrea Blas,Ching Man Wai,Christine M. Ackerman,Yan Ren,Chao Liu,Jianmei Wang,Jianping Wang,Jong Kuk Na,Eugene V. Shakirov,Brian J. Haas,Jyothi Thimmapuram,David R. Nelson,Xiyin Wang,John E. Bowers,Andrea R. Gschwend,Arthur L. Delcher,Ratnesh Singh,Jon Y. Suzuki,Savarni Tripathi,Neupane Kabi Raj,Hairong Wei,Beth Irikura,Maya Devi Paidi,Ning Jiang,Wenli Zhang,Gernot G. Presting,Aaron J. Windsor,Rafael Navajas-Pérez,Manuel J. Torres,F. Alex Feltus,Brad W. Porter,Yingjun Li,A. Max Burroughs,Ming-Cheng Luo,Lei Liu,David A. Christopher,Stephen M. Mount,Paul H. Moore,Tak Sugimura,Jiming Jiang,Mary A. Schuler,Vikki Friedman,Thomas Mitchell-Olds,Dorothy E. Shippen,Claude W. dePamphilis,Jeffrey D. Palmer,Michael Freeling,Andrew H. Paterson,Dennis Gonsalves,Lei Wang,Maqsudul Alam +84 more
TL;DR: Papaya offers numerous advantages as a system for fruit-tree functional genomics, and this draft genome sequence provides the foundation for revealing the basis of Carica’s distinguishing morpho-physiological, medicinal and nutritional properties.
Journal ArticleDOI
Deciphering the high-quality genome sequence of coriander that causes controversial feelings.
Xiaoming Song,Jinpeng Wang,Nan Li,Jigao Yu,Fanbo Meng,Chendan Wei,Chao Liu,Wei Chen,Wei Chen,Fulei Nie,Zhikang Zhang,Ke Gong,Xinyu Li,Jingjing Hu,Qihang Yang,Yuxian Li,Chunjin Li,Shuyan Feng,He Guo,Jiaqing Yuan,Qiaoying Pei,Tong Yu,Xi Kang,Wei Zhao,Tianyu Lei,Pengchuan Sun,Li Wang,Weina Ge,Di Guo,Xueqian Duan,Shaoqi Shen,Chunlin Cui,Ying Yu,Yangqin Xie,Jin Zhang,Yue Hou,Jianyu Wang,Jinyu Wang,Xiu-Qing Li,Andrew H. Paterson,Xiyin Wang,Xiyin Wang +41 more
TL;DR: Gene retention, expression, metabolomics and comparative genomic analyses of terpene synthase (TPS) gene family revealed that tandem duplication contributed to coriander TPS gene family expansion, especially compared to their carrot counterparts.
Journal ArticleDOI
Two Likely Auto-Tetraploidization Events Shaped Kiwifruit Genome and Contributed to Establishment of the Actinidiaceae Family
Jinpeng Wang,Jigao Yu,Jing Li,Pengchuan Sun,Li Wang,Jiaqing Yuan,Fanbo Meng,Sangrong Sun,Yuxian Li,Tianyu Lei,Yuxin Pan,Weina Ge,Zhenyi Wang,Lan Zhang,Xiaoming Song,Chao Liu,Xueqian Duan,Shaoqi Shen,Yangqin Xie,Yue Hou,Jin Zhang,Jianyu Wang,Xiyin Wang +22 more
TL;DR: It is found that polyploidy contributed to the expansion of key functional genes, e.g., vitamin C biosynthesis genes, and provided an important comparative genomics resource in the Actinidiaceae and related families.
Journal ArticleDOI
Recursive Paleohexaploidization Shaped the Durian Genome
Jinpeng Wang,Jiaqing Yuan,Jigao Yu,Fanbo Meng,Pengchuan Sun,Yuxian Li,Nanshan Yang,Zhenyi Wang,Yuxin Pan,Weina Ge,Li Wang,Jing Li,Chao Liu,Yuhao Zhao,Sainan Luo,Dongcen Ge,Xiaobo Cui,Guangdong Feng,Ziwei Wang,Lei Ji,Jun Qin,Xiu-Qing Li,Xiyin Wang,Zhiyan Xi +23 more
TL;DR: The durian genome reanalysis reveals a specific hexaploidization and a decaploidsization in the cotton lineage that increased its evolutionary rate, explaining a previous misinterpretation and suggesting revisiting existing reconstructed phylogenetic trees.
Journal ArticleDOI
Cotton Duplicated Genes Produced by Polyploidy Show Significantly Elevated and Unbalanced Evolutionary Rates, Overwhelmingly Perturbing Gene Tree Topology
Fanbo Meng,Yuxin Pan,Jinpeng Wang,Jigao Yu,Chao Liu,Zhikang Zhang,Chendan Wei,He Guo,Xiyin Wang,Xiyin Wang +9 more
TL;DR: Evaluated phylogenetic relationships of duplicated genes produced by polyploidization in cotton found that at least 83.2% of phylogenetic trees did not conform the expected topology, and found that the reconstructed tree topology may often overestimate natural selection, as compared to the inference with the expected trees.