C
Cuixia Chen
Researcher at Shandong Agricultural University
Publications - 26
Citations - 2095
Cuixia Chen is an academic researcher from Shandong Agricultural University. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 13, co-authored 22 publications receiving 1770 citations. Previous affiliations of Cuixia Chen include University of Illinois at Urbana–Champaign & University of Hawaii.
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Journal ArticleDOI
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
Ray Ming,Shaobin Hou,Yun Feng,Qingyi Yu,Alexandre Dionne-Laporte,Jimmy H. Saw,Pavel Senin,Wei Wang,Benjamin V. Ly,Kanako L. T. Lewis,Steven L. Salzberg,Lu Feng,Matthew Jones,Rachel L. Skelton,Jan E. Murray,Cuixia Chen,Wubin Qian,Junguo Shen,Peng Du,Moriah Eustice,Eric J. Tong,Haibao Tang,Eric Lyons,Robert E. Paull,Todd P. Michael,Kerr Wall,Danny W. Rice,Henrik H. Albert,Ming Li Wang,Yun J. Zhu,Michael C. Schatz,Niranjan Nagarajan,Ricelle A. Acob,Peizhu Guan,Andrea Blas,Ching Man Wai,Christine M. Ackerman,Yan Ren,Chao Liu,Jianmei Wang,Jianping Wang,Jong Kuk Na,Eugene V. Shakirov,Brian J. Haas,Jyothi Thimmapuram,David R. Nelson,Xiyin Wang,John E. Bowers,Andrea R. Gschwend,Arthur L. Delcher,Ratnesh Singh,Jon Y. Suzuki,Savarni Tripathi,Neupane Kabi Raj,Hairong Wei,Beth Irikura,Maya Devi Paidi,Ning Jiang,Wenli Zhang,Gernot G. Presting,Aaron J. Windsor,Rafael Navajas-Pérez,Manuel J. Torres,F. Alex Feltus,Brad W. Porter,Yingjun Li,A. Max Burroughs,Ming-Cheng Luo,Lei Liu,David A. Christopher,Stephen M. Mount,Paul H. Moore,Tak Sugimura,Jiming Jiang,Mary A. Schuler,Vikki Friedman,Thomas Mitchell-Olds,Dorothy E. Shippen,Claude W. dePamphilis,Jeffrey D. Palmer,Michael Freeling,Andrew H. Paterson,Dennis Gonsalves,Lei Wang,Maqsudul Alam +84 more
TL;DR: Papaya offers numerous advantages as a system for fruit-tree functional genomics, and this draft genome sequence provides the foundation for revealing the basis of Carica’s distinguishing morpho-physiological, medicinal and nutritional properties.
Journal ArticleDOI
Sequencing papaya X and Y h chromosomes reveals molecular basis of incipient sex chromosome evolution
Jianping Wang,Jong Kuk Na,Jong Kuk Na,Qingyi Yu,Andrea R. Gschwend,Jennifer Han,Fanchang Zeng,Rishi Aryal,Robert VanBuren,Jan E. Murray,Wenli Zhang,Rafael Navajas-Pérez,Rafael Navajas-Pérez,F. Alex Feltus,F. Alex Feltus,Cornelia Lemke,Eric J. Tong,Cuixia Chen,Cuixia Chen,Ching Man Wai,Ratnesh Singh,Ming Li Wang,Xiang Jia Min,Maqsudul Alam,Deborah Charlesworth,Paul H. Moore,Jiming Jiang,Andrew H. Paterson,Ray Ming +28 more
TL;DR: Sequencing the hermaphrodite-specific region of the Yh chromosome and its X counterpart revealed two evolutionary strata in the X chromosome, corresponding to the two inversions on the HSY, the older of which evolved about 7.0 million years ago.
Journal ArticleDOI
Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes
Jianping Wang,Bruce A. Roe,Simone L. Macmil,Qingyi Yu,Jan E. Murray,Haibao Tang,Cuixia Chen,Fares Z. Najar,Graham B. Wiley,John E. Bowers,Marie-Anne Van Sluys,Daniel S. Rokhsar,Matthew E. Hudson,Stephen P. Moose,Andrew H. Paterson,Ray Ming +15 more
TL;DR: The comparable gene density between sugarcane BACs and corresponding sorghum sequences defied the notion that polyploidy species might have faster pace of gene loss due to the redundancy of multiple alleles at each locus, and can be used as a template for assembling much of the genic DNA of the autopolyploid Sugarcane genome.
Journal ArticleDOI
Wheat Ms2 encodes for an orphan protein that confers male sterility in grass species
Fei Ni,Juan Qi,Qunqun Hao,Bo Lyu,Ming-Cheng Luo,Yan Wang,Fengjuan Chen,Shuyun Wang,Chaozhong Zhang,Lynn Epstein,Xiangyu Zhao,Honggang Wang,Xian Sheng Zhang,Cuixia Chen,Lanzhen Sun,Daolin Fu,Daolin Fu +16 more
TL;DR: The map-based cloning of the Ms2 gene is described and it is shown that Ms2 confers male sterility in wheat, barley and Brachypodium.
Journal ArticleDOI
Origin and domestication of papaya Yh chromosome
Robert VanBuren,Robert VanBuren,Fanchang Zeng,Cuixia Chen,Jisen Zhang,Ching Man Wai,Jennifer Han,Rishi Aryal,Andrea R. Gschwend,Jianping Wang,Jong Kuk Na,Lixian Huang,Lingmao Zhang,Wenjing Miao,Jiqing Gou,Jie Arro,Romain Guyot,Richard C. Moore,Ming Li Wang,Francis Zee,Deborah Charlesworth,Paul H. Moore,Qingyi Yu,Ray Ming,Ray Ming +24 more
TL;DR: The identification of the ancestral MSY3 haplotype will expedite investigation of the mutation leading to the domestication of the hermaphrodite Y(h) chromosome, and should identify the gene that was affected by the carpel-suppressing mutation that was involved in the evolution of males.